CB290488
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.256e-21 Identity = 63/215 (29.30%), Postives = 112/215 (52.09%), Query Frame = -2 Query: 226 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNINREVPXXXXXXXXXXXXXXXXXXXXXVIHALLVSLFGD--VKLGDNGKLVINVDGNVAHLDKQSGDVESE-----NEGLKEKVKAAFKRIQSAVKPI 849 K PE G+ VSGILVK F Y I++P DL ++ L+ + + Q IPY+G F ++ Y+L+++ VE +E P L+V +T+ Q+ + + W ++P +DM +D++ ++L + P + +L +FG+ V + D+ L + VDG A+L+ ++ VE E +E L+E V+ A +R+ A+ P+ Sbjct: 473 KKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.554e-21 Identity = 62/215 (28.84%), Postives = 111/215 (51.63%), Query Frame = -2 Query: 226 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNINREVPXXXXXXXXXXXXXXXXXXXXXVIHALLVSLFGD--VKLGDNGKLVINVDGNVAHLDKQSGDVESE-----NEGLKEKVKAAFKRIQSAVKPI 849 K PE G+ VSGILVK F Y I++P DL ++ L+ + + Q IPY+G F ++ Y+L+++ VE +E P L+V +T+ Q+ + + W ++P +DM +D++ ++L + P + +L +FG+ V + D L + VDG A+++ ++ VE E +E L+E V+ A +R+ A+ P+ Sbjct: 473 KKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21 Identity = 62/215 (28.84%), Postives = 111/215 (51.63%), Query Frame = -2 Query: 226 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNINREVPXXXXXXXXXXXXXXXXXXXXXVIHALLVSLFGD--VKLGDNGKLVINVDGNVAHLDKQSGDVESE-----NEGLKEKVKAAFKRIQSAVKPI 849 K PE G+ VSGILVK F Y I++P DL ++ L+ + + Q IPY+G F ++ Y+L+++ VE +E P L+V +T+ Q+ + W ++P +DM +D++ ++L + P + +L +FG+ V + D+ L + VDG A+++ ++ VE E +E L+E V+ A +R+ A+ P+ Sbjct: 473 KKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELDIQEK--PALKVFKSITVVQEPGM-VGSEWLANPSNDMYADTVTTVILEVQSN-PKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEALTPV 683
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16 Identity = 42/119 (35.29%), Postives = 71/119 (59.66%), Query Frame = -2 Query: 493 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNIN 849 K P G+ V G+L+ F Y I+ P DL F+ LST+ I QR + + ++ ++++ L+ +Y ++ D E G+ TLR+ V ++Q + + + W S +DMV+DSIVAL+L I+ Sbjct: 489 KPPAQGDIVDGLLISKDFAYTILDPKDLTDFTGLSTSTIVQRQRVALAVSWEMVRWHLQGMYGRLQEGVDAEEGLRTLRIMGAVDVRQSARHELLVEWVSSIANDMVADSIVALLLGID 607
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15 Identity = 39/120 (32.50%), Postives = 71/120 (59.17%), Query Frame = -2 Query: 496 PEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESG----VPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNI 843 P+ + + GILV FT+ I++ D+H ++ L T I Q++T+P++ + ++ LEQIYE + ST+ G PT+ +++ + L + I + W S+ ++DM+ DSI+AL+ I Sbjct: 497 PKQNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLTLPFAQTYHILISTLEQIYEQIIESTESTGGGGNEKPTITIYNEIKLIYNIGVSIILEWNSNTVNDMICDSIIALISQI 616
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: YSH1_CRYNE (Endoribonuclease YSH1 OS=Cryptococcus neoformans GN=YSH1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14 Identity = 42/117 (35.90%), Postives = 69/117 (58.97%), Query Frame = -2 Query: 493 PEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNIN 843 PE G +V G+LV F+Y +++P DLH F+ LST+ I Q+ + S + V+++ LE +Y VE +EE G + + V + Q S + + W S +DM++DS +AL+L I+ Sbjct: 499 PEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQKQGVAISVDWAVVRWYLEGMYGEVEEGVEEE-GKAAFIIMNGVQVVQISPTAVELRWKSSSSNDMIADSALALLLGID 614
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13 Identity = 36/116 (31.03%), Postives = 71/116 (61.21%), Query Frame = -2 Query: 496 PEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNI 843 P+ G+ +SGIL++ Y++M+ +DL FS L+TT +TQ+ IP+ + + + L+Q++ V+ S ++G P V D +TL E +++ W + ++D ++DS++ ++L I Sbjct: 499 PKEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFFSSMELANFHLKQMFGYVKQS-KTKAGQPQYTVMDAITLTLIQEHKLALEWVGNIMNDTIADSVITILLGI 613 The following BLAST results are available for this feature:
BLAST of CB290488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290488 ID=CB290488; Name=CB290488; organism=Citrus sinensis; type=EST; length=850bpback to top |