CB290488

Overview
NameCB290488
Unique NameCB290488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10222 contig Csv1_Contig10222:117..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.256e-21
Identity = 63/215 (29.30%), Postives = 112/215 (52.09%), Query Frame = -2
Query:  226 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNINREVPXXXXXXXXXXXXXXXXXXXXXVIHALLVSLFGD--VKLGDNGKLVINVDGNVAHLDKQSGDVESE-----NEGLKEKVKAAFKRIQSAVKPI 849
            K PE G+ VSGILVK  F Y I++P DL  ++ L+ + + Q   IPY+G F ++ Y+L+++   VE    +E   P L+V   +T+ Q+    + + W ++P +DM +D++  ++L +    P                      +  +L  +FG+  V + D+  L + VDG  A+L+ ++  VE E     +E L+E V+ A +R+  A+ P+
Sbjct:  473 KKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683          
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.554e-21
Identity = 62/215 (28.84%), Postives = 111/215 (51.63%), Query Frame = -2
Query:  226 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNINREVPXXXXXXXXXXXXXXXXXXXXXVIHALLVSLFGD--VKLGDNGKLVINVDGNVAHLDKQSGDVESE-----NEGLKEKVKAAFKRIQSAVKPI 849
            K PE G+ VSGILVK  F Y I++P DL  ++ L+ + + Q   IPY+G F ++ Y+L+++   VE    +E   P L+V   +T+ Q+    + + W ++P +DM +D++  ++L +    P                      +  +L  +FG+  V + D   L + VDG  A+++ ++  VE E     +E L+E V+ A +R+  A+ P+
Sbjct:  473 KKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683          
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 62/215 (28.84%), Postives = 111/215 (51.63%), Query Frame = -2
Query:  226 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNINREVPXXXXXXXXXXXXXXXXXXXXXVIHALLVSLFGD--VKLGDNGKLVINVDGNVAHLDKQSGDVESE-----NEGLKEKVKAAFKRIQSAVKPI 849
            K PE G+ VSGILVK  F Y I++P DL  ++ L+ + + Q   IPY+G F ++ Y+L+++   VE    +E   P L+V   +T+ Q+    +   W ++P +DM +D++  ++L +    P                      +  +L  +FG+  V + D+  L + VDG  A+++ ++  VE E     +E L+E V+ A +R+  A+ P+
Sbjct:  473 KKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELDIQEK--PALKVFKSITVVQEPGM-VGSEWLANPSNDMYADTVTTVILEVQSN-PKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEALTPV 683          
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 42/119 (35.29%), Postives = 71/119 (59.66%), Query Frame = -2
Query:  493 KMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNIN 849
            K P  G+ V G+L+   F Y I+ P DL  F+ LST+ I QR  +  + ++ ++++ L+ +Y  ++   D E G+ TLR+   V ++Q +   + + W S   +DMV+DSIVAL+L I+
Sbjct:  489 KPPAQGDIVDGLLISKDFAYTILDPKDLTDFTGLSTSTIVQRQRVALAVSWEMVRWHLQGMYGRLQEGVDAEEGLRTLRIMGAVDVRQSARHELLVEWVSSIANDMVADSIVALLLGID 607          
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15
Identity = 39/120 (32.50%), Postives = 71/120 (59.17%), Query Frame = -2
Query:  496 PEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESG----VPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNI 843
            P+  + + GILV   FT+ I++  D+H ++ L T  I Q++T+P++  + ++   LEQIYE +  ST+   G     PT+ +++ + L  +    I + W S+ ++DM+ DSI+AL+  I
Sbjct:  497 PKQNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLTLPFAQTYHILISTLEQIYEQIIESTESTGGGGNEKPTITIYNEIKLIYNIGVSIILEWNSNTVNDMICDSIIALISQI 616          
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: YSH1_CRYNE (Endoribonuclease YSH1 OS=Cryptococcus neoformans GN=YSH1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 42/117 (35.90%), Postives = 69/117 (58.97%), Query Frame = -2
Query:  493 PEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNIN 843
            PE G +V G+LV   F+Y +++P DLH F+ LST+ I Q+  +  S  + V+++ LE +Y  VE   +EE G     + + V + Q S   + + W S   +DM++DS +AL+L I+
Sbjct:  499 PEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQKQGVAISVDWAVVRWYLEGMYGEVEEGVEEE-GKAAFIIMNGVQVVQISPTAVELRWKSSSSNDMIADSALALLLGID 614          
BLAST of CB290488 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13
Identity = 36/116 (31.03%), Postives = 71/116 (61.21%), Query Frame = -2
Query:  496 PEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITIPYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNI 843
            P+ G+ +SGIL++    Y++M+ +DL  FS L+TT +TQ+  IP+  +  +  + L+Q++  V+ S   ++G P   V D +TL    E  +++ W  + ++D ++DS++ ++L I
Sbjct:  499 PKEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFFSSMELANFHLKQMFGYVKQS-KTKAGQPQYTVMDAITLTLIQEHKLALEWVGNIMNDTIADSVITILLGI 613          
The following BLAST results are available for this feature:
BLAST of CB290488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CPSF3_HUMAN3.256e-2129.30Cleavage and polyadenylation specificity factor su... [more]
CPSF3_BOVIN5.554e-2128.84Cleavage and polyadenylation specificity factor su... [more]
CPSF3_MOUSE9.473e-2128.84Cleavage and polyadenylation specificity factor su... [more]
YSH1_USTMA4.119e-1635.29Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 P... [more]
CPSF3_DICDI1.565e-1532.50Cleavage and polyadenylation specificity factor su... [more]
YSH1_CRYNE6.576e-1435.90Endoribonuclease YSH1 OS=Cryptococcus neoformans G... [more]
YSH1_SCHPO2.499e-1331.03Endoribonuclease ysh1 OS=Schizosaccharomyces pombe... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290488 ID=CB290488; Name=CB290488; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTGGGAGAACAGCGGCTGTATTCATCCTTTAATTT
GAGGCTAAGCTGTACAGGCTAACGATTCAAGCGTTCGGAACAATCTATCT
ACGTTGCTTGAAAATCAAACCTGCAGCACGGGCTTCGGTTCTGAAGTTTC
CTCAAAATCCAGAAACATGTTAAAAAGATGGGAAAAGACATTAGATGAGA
ACAGAATCTAAGATGCAGCGAGTGGGATAGGCTTTACTGCACTTTGAATT
CGCTTAAATGCTGCTTTAACTTTTTCCTTGAGGCCTTCATTTTCGCTCTC
TACATCTCCGCTTTGTTTATCAAGATGTGCCACATTCCCATCAACATTTA
TCACCAGCTTTCCGTTATCTCCTAATTTCACATCTCCAAAGAGTGAGACA
AGCAGTGCATGAATAACCTTTTCTGCTTTCTTCCCACTTTCTTCCTCAGA
TTTTATGGCCTCTGATTCCACAACTACCTTAGGAACCTCCCGATTGATGT
TTAGAACCAATGCTACAATAGAATCTGACACCATGTCACTTATAGGATCT
GAAGTCCAATGCATCGATATATGCTTCTCTGAGTCCTGCTTCAAAGTCAC
TCGATCGTGCACTCGTAGAGTAGGAACCCCAGATTCCTCATCTGTCGAAG
ACTCCACACTCTCGTATATCTGCTCAAGCCGGTACTTTATCACACCAAAG
GCCCCTGAGTACGGGATAGTAATCCTCTGGGTAATATTTGTTGTTGATAG
CTGTGAGAAGATGTGAAGATCATCAGGAGCCATTATCTGGTAAGTGAAAC
CTGTCTTTACAAGTATGCCACTGACAGTTTCACCAACTTCCGGCATTTTC
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