CB290489

Overview
NameCB290489
Unique NameCB290489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig212 contig Csv1_Contig212:2..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.917e-91
Identity = 151/239 (63.18%), Postives = 190/239 (79.50%), Query Frame = 1
Query:   73 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP   GM ALPY D IDP+ ID+LLI+HFHLDH  +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF + +H  +++GGR LIP +ALG
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 244          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.917e-91
Identity = 151/239 (63.18%), Postives = 190/239 (79.50%), Query Frame = 1
Query:   73 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP   GM ALPY D IDP+ ID+LLI+HFHLDH  +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF + +H  +++GGR LIP +ALG
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 244          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.318e-90
Identity = 151/239 (63.18%), Postives = 189/239 (79.08%), Query Frame = 1
Query:   73 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP   GM ALPY D IDP+ ID+LLI+HFHLDH  +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF   +H  +++GGR LIP +ALG
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALG 244          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 7.485e-86
Identity = 148/235 (62.98%), Postives = 183/235 (77.87%), Query Frame = 1
Query:   85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            D L  I LGAGNEVGRSC  + Y+GKT++ D G+HPAY+G++ALP+FDE D S +DVLLI+HFHLDH ASLPY ++KT F GRVFMTH TKA+ K LL+DYVKVS V +ED L+DE+D+  + DRIE +D+H T+EV GIKF  Y AGHVLGA M+ V++AGV +L+TGDYSREEDRHL  AE+P   PD+ I ESTYG   HQPR  +E R  ++IHSTI  GGRVL+P +ALG
Sbjct:   35 DLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVFALG 269          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.145e-84
Identity = 146/250 (58.40%), Postives = 195/250 (78.00%), Query Frame = 1
Query:   49 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED-MLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            LKR     + + D L I P+G+G+EVGRSCV + Y+GK ++FDCG+HPAYSG+ +LP+FD I+     ID+LL++HFHLDHAA++PYF+ KT F GRVFMTH TKAIY +LL+DYVKVS ++ +D MLFD+ D++RS+++IE + + Q VE NGIK  C+ AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL  AE P    D+ IIESTYGVQ+H+PR  RE+RFT  +H  + + G+ LIP +ALG
Sbjct:   22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALG 271          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_KLULA (Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.012e-82
Identity = 143/242 (59.09%), Postives = 184/242 (76.03%), Query Frame = 1
Query:   85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            D L    LG  NEVGRSC  + Y+GKT++ D GIHPA+ G+A+LPY+DE D S ID+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ +       S  D L+ ++D+  S DRIE +D+H T+EVNGIKF  + AGHVLGAAMF ++IAGVRVL+TGDYSRE DRHL +AE+P  S D+ I+EST+G   H+PR  RER+ T +IH+ +S+GGRVL+P +ALG
Sbjct:   12 DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALG 253          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_CANGA (Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.551e-81
Identity = 139/246 (56.50%), Postives = 185/246 (75.20%), Query Frame = 1
Query:   70 VSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            V    +Q     LG GNEVGRSC  + ++GKTI+ D GIHPAY GMA+LP++D+ D S +DVLLI+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ +      + +D L+  +D+  S D+IE +D+H  ++VNGIKF  + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P    DI I+EST+G   H+PR  RE++ T +IHST+++GGRVL+P +ALG
Sbjct:    3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAEDDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTVNKGGRVLMPVFALG 248          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.615e-80
Identity = 137/238 (57.56%), Postives = 182/238 (76.47%), Query Frame = 1
Query:   79 EGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            + D  + + LG G EVGRSC  +S++GKTI+ D G+HPA+SG+A+LP++DE D S ID+LLI+HFHLDHAASLPY ++KT F GRVFMTH TK IY+ LL+D+V+V+  +  D  L+ E D+  S ++IE +D+H T+EVNG+KF  Y AGHVLGAAM+ +++ GV+VL+TGDYSREEDRHL  AE+P   PDI I ESTYG   H PR  RE+R T +IHST+ +GG+ L+P +ALG
Sbjct:   33 DSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALG 270          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_YEAST (Endoribonuclease YSH1 OS=Saccharomyces cerevisiae GN=YSH1 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 8.016e-80
Identity = 136/236 (57.63%), Postives = 183/236 (77.54%), Query Frame = 1
Query:  106 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            LG  NEVGRSC  + Y+GKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ +        + ++ LF ++D+  S D+IE +D+H TV+VNGIKF  + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P  S ++ I+EST+G   H+PR  RER+ T +IHST+ +GGRVL+P +ALG
Sbjct:   14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALG 249          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_ASHGO (Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.978e-79
Identity = 133/235 (56.60%), Postives = 182/235 (77.45%), Query Frame = 1
Query:  106 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-------VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            LG  NEVGRSC  + Y+GKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDHAASLPY +++T F  RVFMTH TKAIY+ LL+D+VKV+ +         ++ L+ ++D+  S DRIE +D+H T++VNGIKF  Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL +AE+P    DI I+EST+G   H+PR  +E++ T +IH+T+S+GGRVL+P +ALG
Sbjct:   16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDHAASLPYIMQRTNFQVRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLAESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALG 250          
The following BLAST results are available for this feature:
BLAST of CB290489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CPSF3_HUMAN5.917e-9163.18Cleavage and polyadenylation specificity factor su... [more]
CPSF3_BOVIN5.917e-9163.18Cleavage and polyadenylation specificity factor su... [more]
CPSF3_MOUSE1.318e-9063.18Cleavage and polyadenylation specificity factor su... [more]
YSH1_SCHPO7.485e-8662.98Endoribonuclease ysh1 OS=Schizosaccharomyces pombe... [more]
CPSF3_DICDI3.145e-8458.40Cleavage and polyadenylation specificity factor su... [more]
YSH1_KLULA1.012e-8259.09Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=Y... [more]
YSH1_CANGA5.551e-8156.50Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 ... [more]
YSH1_YARLI1.615e-8057.56Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YS... [more]
YSH1_YEAST8.016e-8057.63Endoribonuclease YSH1 OS=Saccharomyces cerevisiae ... [more]
YSH1_ASHGO3.978e-7956.60Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290489 ID=CB290489; Name=CB290489; organism=Citrus sinensis; type=EST; length=790bp
GCCCTTGGTTCACTTGAAAGCATGGCTTCAACGGGGCAACCGCCGTCACT
AAAAAGACGGGACGTGCCGGTATCAAGAGAAGGTGACCAACTTACAATAA
TCCCACTAGGAGCTGGCAATGAAGTGGGAAGATCCTGTGTGTACATGTCC
TATAGAGGGAAAACTATTTTGTTTGACTGTGGAATTCATCCCGCTTACTC
GGGTATGGCTGCATTGCCTTACTTCGATGAGATTGATCCTTCAGCAATTG
ATGTCCTTCTTATCACACACTTTCATTTGGATCATGCTGCATCCCTACCT
TATTTTCTGGAGAAGACTACATTCAGTGGCAGGGTATTTATGACTCATGC
TACAAAGGCTATTTACAAGTTGCTTTTGACTGATTATGTAAAAGTGAGCA
AAGTTTCAGTTGAAGATATGTTGTTCGATGAACAAGACATTAATCGCTCC
ATGGATAGAATTGAGGTTCTTGATTTCCATCAGACAGTGGAAGTGAATGG
CATTAAATTCTGGTGTTATACCGCTGGCCATGTCCTGGGTGCTGCCATGT
TTATGGTTGACATTGCTGGTGTTCGAGTACTCTACACTGGAGATTATTCT
CGTGAAGAAGACCGACATCTCCGTGCTGCTGAGCTTCCTCAGTTCTCTCC
TGACATTTGTATAATCGAATCCACTTATGGTGTTCAGCTTCATCAACCAC
GGAACATTCGTGAGAGGCGCTTCACTGATGTTATTCACTCAACTATTTCT
CAAGGAGGTCGTGTTCTAATTCCGGCATATGCCCTTGGCC
back to top