CB290489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1) HSP 1 Score: 333.954 bits (855), Expect = 5.917e-91 Identity = 151/239 (63.18%), Postives = 190/239 (79.50%), Query Frame = 1 Query: 73 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP +ALG Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 244
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1) HSP 1 Score: 333.954 bits (855), Expect = 5.917e-91 Identity = 151/239 (63.18%), Postives = 190/239 (79.50%), Query Frame = 1 Query: 73 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP +ALG Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 244
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 1.318e-90 Identity = 151/239 (63.18%), Postives = 189/239 (79.08%), Query Frame = 1 Query: 73 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF +H +++GGR LIP +ALG Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALG 244
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 7.485e-86 Identity = 148/235 (62.98%), Postives = 183/235 (77.87%), Query Frame = 1 Query: 85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 D L I LGAGNEVGRSC + Y+GKT++ D G+HPAY+G++ALP+FDE D S +DVLLI+HFHLDH ASLPY ++KT F GRVFMTH TKA+ K LL+DYVKVS V +ED L+DE+D+ + DRIE +D+H T+EV GIKF Y AGHVLGA M+ V++AGV +L+TGDYSREEDRHL AE+P PD+ I ESTYG HQPR +E R ++IHSTI GGRVL+P +ALG Sbjct: 35 DLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVFALG 269
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 3.145e-84 Identity = 146/250 (58.40%), Postives = 195/250 (78.00%), Query Frame = 1 Query: 49 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED-MLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 LKR + + D L I P+G+G+EVGRSCV + Y+GK ++FDCG+HPAYSG+ +LP+FD I+ ID+LL++HFHLDHAA++PYF+ KT F GRVFMTH TKAIY +LL+DYVKVS ++ +D MLFD+ D++RS+++IE + + Q VE NGIK C+ AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AE P D+ IIESTYGVQ+H+PR RE+RFT +H + + G+ LIP +ALG Sbjct: 22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALG 271
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_KLULA (Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=YSH1 PE=3 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 1.012e-82 Identity = 143/242 (59.09%), Postives = 184/242 (76.03%), Query Frame = 1 Query: 85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 D L LG NEVGRSC + Y+GKT++ D GIHPA+ G+A+LPY+DE D S ID+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ + S D L+ ++D+ S DRIE +D+H T+EVNGIKF + AGHVLGAAMF ++IAGVRVL+TGDYSRE DRHL +AE+P S D+ I+EST+G H+PR RER+ T +IH+ +S+GGRVL+P +ALG Sbjct: 12 DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALG 253
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_CANGA (Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 PE=3 SV=1) HSP 1 Score: 300.827 bits (769), Expect = 5.551e-81 Identity = 139/246 (56.50%), Postives = 185/246 (75.20%), Query Frame = 1 Query: 70 VSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 V +Q LG GNEVGRSC + ++GKTI+ D GIHPAY GMA+LP++D+ D S +DVLLI+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + + +D L+ +D+ S D+IE +D+H ++VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P DI I+EST+G H+PR RE++ T +IHST+++GGRVL+P +ALG Sbjct: 3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAEDDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTVNKGGRVLMPVFALG 248
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2) HSP 1 Score: 299.286 bits (765), Expect = 1.615e-80 Identity = 137/238 (57.56%), Postives = 182/238 (76.47%), Query Frame = 1 Query: 79 EGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 + D + + LG G EVGRSC +S++GKTI+ D G+HPA+SG+A+LP++DE D S ID+LLI+HFHLDHAASLPY ++KT F GRVFMTH TK IY+ LL+D+V+V+ + D L+ E D+ S ++IE +D+H T+EVNG+KF Y AGHVLGAAM+ +++ GV+VL+TGDYSREEDRHL AE+P PDI I ESTYG H PR RE+R T +IHST+ +GG+ L+P +ALG Sbjct: 33 DSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALG 270
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_YEAST (Endoribonuclease YSH1 OS=Saccharomyces cerevisiae GN=YSH1 PE=1 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 8.016e-80 Identity = 136/236 (57.63%), Postives = 183/236 (77.54%), Query Frame = 1 Query: 106 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 LG NEVGRSC + Y+GKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+ S D+IE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P S ++ I+EST+G H+PR RER+ T +IHST+ +GGRVL+P +ALG Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALG 249
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_ASHGO (Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 PE=3 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 3.978e-79 Identity = 133/235 (56.60%), Postives = 182/235 (77.45%), Query Frame = 1 Query: 106 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-------VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 LG NEVGRSC + Y+GKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDHAASLPY +++T F RVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+ S DRIE +D+H T++VNGIKF Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL +AE+P DI I+EST+G H+PR +E++ T +IH+T+S+GGRVL+P +ALG Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDHAASLPYIMQRTNFQVRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLAESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALG 250 The following BLAST results are available for this feature:
BLAST of CB290489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290489 ID=CB290489; Name=CB290489; organism=Citrus sinensis; type=EST; length=790bpback to top |