CB290493

Overview
NameCB290493
Unique NameCB290493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290493_ssr675 microsatellite CB290493_ssr675:675..686. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2836 contig Csv1_Contig2836:44..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.020e-46
Identity = 99/177 (55.93%), Postives = 113/177 (63.84%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA--WANR------------XXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRKCK 795
            A    PPPFL+KTY ++EDP TD VISWN  GTGFVVWQPAEFARDLLPTLFKH NFSSFVRQLNTYGFRKV T RWEF N+MFRKG+++L+  IRRRK+  W++                        + H EDQ+          Y  L DENK LK EN  LS EL   K+KCK
Sbjct:   33 AELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVVPTTTMVNQEGHQRIGIDHHHEDQQSSATSSSFV-YTALLDENKCLKNENELLSCELGKTKKKCK 208          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.187e-38
Identity = 82/179 (45.81%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK-----------------AWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRKC 792
            ++++ P PFLLKTY L++D ATD+VISWN  GT FVVW+ AEFA+DLLP  FKH+NFSSFVRQLNTYGFRK+   +WEF N+ F++G+K+LL  IRRRK                 A  +                ++           ++  L DEN++LKK+N  LSSELV  K++C
Sbjct:    2 SQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTSTPAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQC 180          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.005e-37
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 1
Query:  310 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWA 612
            ++S P PFL KTY L+EDPA D+VISWN DG+ FVVW+PAEFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N  FR+GEK LLC I RRK  A
Sbjct:   32 QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVA 132          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.238e-37
Identity = 81/174 (46.55%), Postives = 105/174 (60.34%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA----WANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNT---------LRDENKRLKKENGNLSSELVSMKRK 789
            A++S P PFL KTY L++D +TD+V+SWN +GT FVVW+ AEFA+DLLP  FKH+NFSSF+RQLNTYGFRK    +WEF N  FR+G +DLL  IRRRK+     A +               +D             N          L  EN++LK+EN NLSSEL + K++
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAKKQ 180          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1
Query:  310 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            +++ P PFL KTY L++DPA D+VISWN DG+ FVVW+PAEFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N  FR+GE+ LLC+I RRK
Sbjct:   42 QRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.512e-37
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  295 LLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            ++E   K+ P PFL KTY L++DPATD+V+SW  D T FVVW+P EFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N+ F++GEK LLC+I RRK
Sbjct:   23 MVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRK 125          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 81/174 (46.55%), Postives = 94/174 (54.02%), Query Frame = 1
Query:  325 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWA------------------NRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRKC 792
            PPFL KTY ++EDP+TD  ISWN  GT FVVW+PAEFARDLLP  FKHSNFSSFVRQLNTYGF+KV   RWEF N  FR+GEK LL  I+RRK                     +             S                   L +EN RL++EN  L+ EL   +R C
Sbjct:    9 PPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGAGAAPAGGIPTAIPISSPPTSSGGEPAVSSSPPRGAAGIAAGVSGAVAELEEENARLRRENARLARELARARRVC 182          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.604e-35
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 1
Query:  322 PPPFLLKTYMLIEDPATDNVISWNGDGTG-----FVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWA 612
            P PFL KTY L++DPATD+V+SW  D  G     FVVW+P EFARD+LP  FKHSNFSSFVRQLNTYGFRKV   RWEF N+ FRKGEK LLC+I RRK+ A
Sbjct:   23 PAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKSAA 124          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.573e-35
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA 606
            A K  P PFL KTY L++DP TD+++SW  D T FVVW+P EFARDLLP  FKH+NFSSFVRQLNTYGFRK+   RWEF N+ FRKG K LL +I RRK+
Sbjct:   27 AGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKS 126          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.573e-35
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            +++S P PFL KTY L+EDP  D +ISWN DGT F+VW+PAEFARDLLP  FKH+NFSSFVRQLNTYGFRKV   RWEF N  F++GEK LL  I+RRK
Sbjct:   52 SQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRK 150          
The following BLAST results are available for this feature:
BLAST of CB290493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSFB3_ARATH2.020e-4655.93Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HSF24_SOLPE1.187e-3845.81Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB2C_ORYSJ1.005e-3771.29Heat stress transcription factor B-2c OS=Oryza sat... [more]
HSFB1_ARATH2.238e-3746.55Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB2B_ORYSJ4.986e-3769.39Heat stress transcription factor B-2b OS=Oryza sat... [more]
HSFB4_ARATH6.512e-3766.02Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB2A_ORYSJ1.228e-3546.55Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFB4A_ORYSJ1.604e-3568.63Putative heat stress transcription factor B-4a OS=... [more]
HFB4B_ORYSJ3.573e-3566.00Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB2B_ARATH3.573e-3568.69Heat stress transcription factor B-2b OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290493 ID=CB290493; Name=CB290493; organism=Citrus sinensis; type=EST; length=796bp
GCACGTGGGAAGTCTTTAGCAATTAAATAGCATTGCAATTGAATTCTCAT
GAATTGCCCTCGTGGAGTCGTATTGGGTTTCTATTGTTGGGGCTGGGAGT
TCTTAACTGCAATTCTCATCTTCTCCAATATCCTTCTTCATCTTTAGATT
AATCTTCTTCTCTTTTAGCTAATTTCCCTCTTCAATATTTCCCTTCTTTT
TTTTTTTTTGGTCTTTTTAATTGTTTGCGATATTTGAAATATGGAGGCTA
CAAATAATATTACAATAAGCAGCTGCTGTGATGACAATAAGGGCCTACTG
GAATATGCCAGAAAATCAACACCCCCACCATTTCTGTTGAAGACTTACAT
GCTAATAGAGGATCCGGCCACCGATAACGTCATCTCGTGGAACGGCGACG
GCACCGGCTTCGTTGTCTGGCAGCCGGCCGAGTTTGCCCGGGATCTACTG
CCGACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAA
TACTTACGGATTTCGAAAAGTAGCAACAAGCAGGTGGGAATTTTGCAACC
AAATGTTTAGAAAGGGGGAGAAAGATCTTTTATGCAAGATACGTCGAAGA
AAAGCATGGGCAAACAGGCAGCAAGCAGCAACGGCAGCAGCAACACAACA
AGAATCTCATGATGAAGATCAAAGGTCGTCGTCGTCGACGTCATCGTTGT
CGGAGTACAACACCCTAAGGGATGAGAATAAGCGTTTGAAGAAGGAGAAT
GGGAACTTAAGTTCGGAGCTTGTAAGCATGAAAAGGAAGTGCAAGG
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