CB290497

Overview
NameCB290497
Unique NameCB290497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4748 contig Csv1_Contig4748:447..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290497 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.091e-58
Identity = 121/156 (77.56%), Postives = 132/156 (84.62%), Query Frame = 3
Query:   12 QHXXVMDGSTLIKPEMLMSASDEAPSADSKKAMSPAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNYPSF 479
            QH   MDGS  I  EMLMS +++  + D+KK+MS  KLAELALIDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LN+ALKEEIQHLKVLTGQ  P+    +NY SF
Sbjct:  158 QHSQSMDGSMNIN-EMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSA---LNYGSF 309          
BLAST of CB290497 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 5.907e-57
Identity = 119/156 (76.28%), Postives = 129/156 (82.69%), Query Frame = 3
Query:   12 QHXXVMDGSTLIKPEMLMSAS---DEAPSADSKKAMSPAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNY 470
            QH   MD S  IK E L+ AS   +   SA++KKA+S AKLAELAL+DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEAT+LSAQL LLQRDT+GLT ENSELKLRLQTMEQQVHLQDALND LK E+Q LKV TGQ    GG MMN+
Sbjct:  134 QHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNF 289          
BLAST of CB290497 vs. ExPASy Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.574e-44
Identity = 93/142 (65.49%), Postives = 113/142 (79.58%), Query Frame = 3
Query:   12 QHXXVMDGSTLIKPEMLMSASDEAPSADSKKAMSPAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 437
            +H   +DGS         +A+  A   ++KKAM+P +L++LA IDPKRAKRI ANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTL QRDT GL+AEN+ELK+RLQ MEQQ  L+DALNDALK+E++ LK+ TG+
Sbjct:   88 RHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGE 229          
The following BLAST results are available for this feature:
BLAST of CB290497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
POF21_ARATH4.091e-5877.56Probable transcription factor PosF21 OS=Arabidopsi... [more]
RF2A_ORYSJ5.907e-5776.28Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
RF2B_ORYSJ2.574e-4465.49Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290497 ID=CB290497; Name=CB290497; organism=Citrus sinensis; type=EST; length=481bp
GCCAGTGAGATCAGCACAGNNCAGTAATGGATGGTTCGACGCTTATAAAG
CCAGAAATGCTCATGTCAGCTTCAGATGAGGCGCCTTCTGCTGATTCGAA
GAAAGCTATGTCCCCTGCTAAGCTTGCTGAACTAGCACTCATTGATCCAA
AGCGTGCAAAGAGAATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCGAAG
GAAAGGAAGATGCGATACATAGCTGAGCTTGAACGTAAAGTACAGACATT
ACAAACTGAAGCAACCTCATTGTCTGCTCAATTGACATTATTGCAGAGAG
ATACTAATGGTCTGACTGCTGAAAATAGTGAATTGAAACTGCGTTTGCAA
ACGATGGAGCAACAAGTCCACTTGCAAGATGCCCTAAATGATGCACTGAA
GGAGGAGATTCAGCATCTGAAGGTATTGACTGGCCAAGCAATGCCTAATG
GTGGACCAATGATGAACTATCCGTCTTTTGG
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