CB290498

Overview
NameCB290498
Unique NameCB290498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:595..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.681e-97
Identity = 177/212 (83.49%), Postives = 197/212 (92.92%), Query Frame = -2
Query:  198 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPG--AVARL 827
            TPRLGRREADIKNRFVLPP LTLKN+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAEDA LA+Q+GAAGIIVSNHGARQLDYVPAT+MALEEVV+AA+GR+PVFLDGGVRRGTDVFKALALGA+GVF+GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+HI   WD P   AVARL
Sbjct:  158 TPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 369          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 3.502e-97
Identity = 175/210 (83.33%), Postives = 193/210 (91.90%), Query Frame = -2
Query:  198 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 827
            TPRLGRRE+DIKNRF LPP+LTLKN+EGL +GKMD+ +DSGLASYVA QIDR+L+WKDV+WLQTIT LPILVKGVLT EDA +AIQ GAAGIIVSNHGARQLDYVPAT+ ALEEVV+A +GR+PVFLDGGVRRGTDVFKALALGASG+F+GRPV FSLA +GEAGVRKVLQMLRDEFELTMALSGCRSLKEI+RNHI T WDTP   ARL
Sbjct:  158 TPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.270e-96
Identity = 172/210 (81.90%), Postives = 194/210 (92.38%), Query Frame = -2
Query:  198 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 827
            TPRLGRRE+DIKNRF LPP+LTLKN+EGL +GKMD+ +DSGLASYVA QIDR+L+WKD++WLQTIT++PILVKGVLT EDA +AIQ GAAGIIVSNHGARQLDYVPAT+ ALEEVV+A +GRVPVFLDGGVRRGTDVFKALALGASG+F+GRPV F+LA +GEAGV+KVLQMLRDEFELTMALSGCRSL EITRNHIVT WDTP  + RL
Sbjct:  158 TPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPRL 367          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.433e-59
Identity = 112/197 (56.85%), Postives = 149/197 (75.63%), Query Frame = -2
Query:  246 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT---DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 827
            TP LG R  D++NRF LPP L +KN+E   +    +    DDSGLA+YVA  ID S++W+D+KWL+ +TSLPI+ KG+L  +DA  A+++G  GI+VSNHGARQLD VPAT+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  161 TPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.454e-58
Identity = 113/197 (57.36%), Postives = 148/197 (75.13%), Query Frame = -2
Query:  246 TPRLGRREADIKNRFVLPPHLTLKNYEG---LYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 827
            TP LG R  D++NRF LPP L +KN+E     +  K +  D+SGLA YVA  ID SL+W D+ WL+ +TSLPI+VKG+L  +DA  A+++G  GI+VSNHGARQLD VPAT+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  161 TPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDAKEAVKHGVDGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.540e-52
Identity = 105/202 (51.98%), Postives = 138/202 (68.32%), Query Frame = -2
Query:  222 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWD 827
            TP LG+R AD KN F LP  L+LK +E L +  +D     GL  Y+A  ID SL W D+KWL++IT LPILVKG++  +DA LA+QYGA GIIVSNHG RQLD  P+T+  L  + +  +GRVP+ LDGG+RRGTDV KALA GA+ V +GRP+ + L+  G+ GV KVL +L  E +L MAL+G  ++ +I  + I   WD
Sbjct:  187 TPFLGKRTADFKNSFKLPNGLSLKIFEKLMLSNLD----GGLNQYIATMIDPSLTWNDLKWLKSITKLPILVKGIMCPKDAELALQYGADGIIVSNHGGRQLDTCPSTIEVLPYISKVVRGRVPLILDGGIRRGTDVLKALAFGANAVCIGRPIIWGLSTGGKDGVLKVLNLLNSELQLAMALTGITNISDINNSII---WD 381          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.263e-46
Identity = 97/196 (49.49%), Postives = 134/196 (68.37%), Query Frame = -2
Query:  237 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 824
            P++G R  DI N+  L   L LK+     +G +       +  +  + ID S+ W+D+ W Q++T LPI++KG+LT EDA LA+++   GIIVSNHG RQLD VPA++ AL EVV A KG+V V+LDGG+R G DV KALALGA  VFVGRP+ + LA  GE GV++VL +L++EF  +M L+GCRS+ EI ++ I
Sbjct:  160 PKVGNRRNDITNQVDLMKKLLLKDLGSPEMGNV-------MPYFQMSPIDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKVEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGCRSVAEINQDLI 348          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.063e-45
Identity = 98/195 (50.26%), Postives = 130/195 (66.67%), Query Frame = -2
Query:  243 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 827
            TP  G R  DI+N+  L  +LTL + +    G       + +  +    I  SL W D+ W Q+IT LPI++KG+LT EDA LA+++   GIIVSNHG RQLD V A++ AL EVV A KG++ V+LDGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L +EF  +MAL+GCRS+ EI RN
Sbjct:  159 TPVCGNRRHDIRNQ--LRRNLTLTDLQSPKKG-------NAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRN 344          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.367e-42
Identity = 94/193 (48.70%), Postives = 126/193 (65.28%), Query Frame = -2
Query:  249 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 827
            TP LG R  D +N+  L  ++ LK+   L   K +K   S   S+       S  W D+  LQ+IT LPI++KG+LT EDA LA+++   GI+VSNHG RQLD V A++ AL EVV A KG++ V++DGGVR GTDV KALALGA  +F+GRP+ + LA  GE GV++VL +L  E    M LSGC+S+ EI+
Sbjct:  159 TPVLGNRRRDKRNQLNLEANILLKDLRAL---KEEKPTQSVPVSFPK----ASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 344          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.013e-40
Identity = 91/192 (47.40%), Postives = 126/192 (65.62%), Query Frame = -2
Query:  249 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 824
            P LG R  + ++   L  ++ LK+       K      SGL + ++     S  W D+  LQ++T LPI++KG+LT EDA LA+++   GIIVSNHG RQLD VPA++ AL EVV A  G++ V++DGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L++E    MALSGCRS+ EI+
Sbjct:  160 PVLGNRRGNKRSLLDLEANIKLKDLRSPGESK------SGLPTPLSMPSSSSC-WNDLPLLQSMTRLPIILKGILTKEDAELAVKHNIRGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344          
The following BLAST results are available for this feature:
BLAST of CB290498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX_SPIOL2.681e-9783.49Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH3.502e-9783.33Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH2.270e-9681.90Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN8.433e-5956.85Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE2.454e-5857.36Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX_DICDI1.540e-5251.98Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_BOVIN1.263e-4649.49Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN4.063e-4550.26Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_RAT9.367e-4248.70Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
HAOX2_MOUSE3.013e-4047.40Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290498 ID=CB290498; Name=CB290498; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTTAATAAAAAGCCCCAAGCCAAGCCACCCTTTGCCA
AGCCAAGCCGCACCTCCCTTTATTTAATTAATCCCTACATCCTTGTCGTC
TTAACAATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAG
TTGTTTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAA
TCTGGCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTG
TAATCTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAAC
TCATCACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAAC
TGCCAGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTA
GAGCCAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGG
AAAACAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCAT
AACAGTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAA
TGATTCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTA
AGAACACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACTT
CACATCCTTCCAGTTCAGTGACCGGTCAATTTGGTTGGCAACATACGAAG
CTAATCCAGAGTCATCAGTCTTATCCATCTTGCCAATATACAAGCCCTCA
TAGTTCTTCAAAGTCAGATGTGGCGGCAAAACAAATCTGTTCTTAATATC
AGCTTCCCGACGGCCAAGCCTTGGAGTA
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