CB290501

Overview
NameCB290501
Unique NameCB290501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:243..1037. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290501 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.223e-27
Identity = 64/118 (54.24%), Postives = 76/118 (64.41%), Query Frame = 3 
Query:   48 KLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 401
            KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    6 KLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CB290501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.223e-2754.24Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290501 ID=CB290501; Name=CB290501; organism=Citrus sinensis; type=EST; length=796bp
GCCCGTGGGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCCATAGAAG
CTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAG
GCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGG
CGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGT
CCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCG
TAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTA
CTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCT
CCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCA
TCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGTCA
CCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTCGTT
TTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTTGTATTAC
GTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAAGTA
AACTAAAGACTGTGATGTTTTTATATCATATAATTTAATAATTGTATGTG
ATGTGAGGATTGCTAAGCTGTGGGCGGAGATGAAAGGTTGCTGGTTTTTG
GGTTTAGGACATGTTTTTGATTGTCCTTTTGTAAGAGCCAAGATCATCCC
TTCGTGGACGGTCGTGATGAGCATATATGTTTTATTATTAATAAAT
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