CB290513

Overview
NameCB290513
Unique NameCB290513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig136 contig Csv1_Contig136:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 124/163 (76.07%), Postives = 139/163 (85.28%), Query Frame = 1
Query:  214 MAEAPT-SPAG-GSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQA 696
            MAE+   SP G GSHESGG+QSP +  VREQDR+LPIANISRIMK+ LPANGKIAKDAK+ VQECVSEFISF+TSEASDKCQ+EKRKTINGDDLLWAMATLGFEDY++PLK YLMRYREMEGDTKGSA+GGD +AK+D   +  GQ +Q A QGP  Y N QA
Sbjct:    1 MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQGP--YGNSQA 161          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.825e-61
Identity = 117/153 (76.47%), Postives = 130/153 (84.97%), Query Frame = 1
Query:  214 MAEAPTSPAGG-SHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQG 669
            MAE+ T   GG SHESGG+QSP +  VREQDR+LPIANISRIMK+ LP NGKIAKDAK+T+QECVSEFISF+TSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYIDPLK YLMRYREMEGDTKGS +GG+ SAKRD   +   Q +Q   QG
Sbjct:    1 MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQG 153          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 119/170 (70.00%), Postives = 133/170 (78.24%), Query Frame = 1
Query:  214 MAEAPTSPAGG--SHESGGEQSPHAGG-VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG-------ALPGQNAQYALQGPLNYVNPQ 693
            MAEAP SP GG  SHESG  +    GG VREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+  DGS K+D +G       A  G   Q A    + Y+ PQ
Sbjct:    1 MAEAPASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQ 170          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.139e-58
Identity = 118/177 (66.67%), Postives = 133/177 (75.14%), Query Frame = 1
Query:  214 MAEAPTSPAGG--SHESG--------GEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG-------ALPGQNAQYALQGPLNYVNPQ 693
            MA+ P SP GG  SHESG        G      GGVREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+ GDGS K+D +G       +  G   Q A    + Y+ PQ
Sbjct:    1 MADGPGSPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSSSSAQGMGQQAAYNQGMGYMQPQ 177          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.011e-56
Identity = 110/144 (76.39%), Postives = 119/144 (82.64%), Query Frame = 1
Query:  214 MAEAPTSPAGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQ 645
            MA+ P+SPAG   ESGG        VREQDRYLPIANISRIMKKALP NGKI KDAKDTVQECVSEFISFITSEASDKCQKEKRKT+NGDDLLWAMATLGFEDY++PLK YL RYRE+EGD KGS + GDGS  RD  G + G+
Sbjct:    1 MADTPSSPAGDGGESGGS-------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS-NRDAGGGVSGE 136          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.971e-52
Identity = 106/165 (64.24%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  220 EAPTSPAGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYA-------LQGPLNYVNPQ 693
            E     A   H+  G   P +GGVREQDR+LPIANISRIMKKA+PANGKIAKDAK+T+QECVSEFISF+TSEASDKCQKEKRKTING+DLL+AM TLGFE+Y+DPLK YL +YRE+ GD+K S++ GDGS K+DTIG   G ++  A        QG + Y+ PQ
Sbjct:   10 EGGAGMADAGHDESGSP-PRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGSVKKDTIGPHSGASSSSAQGMVGAYTQG-MGYMQPQ 172          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 89/135 (65.93%), Postives = 106/135 (78.52%), Query Frame = 1
Query:  238 AGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR---GGD-GSAKRDTIG 630
            +GG      +    +   REQDR+LPIAN+SRIMKKALPAN KI+KDAK+T+QECVSEFISF+T EASDKCQKEKRKTINGDDLLWAM TLGFEDY++PLK YL R+RE+EG+  G  R   GG+ G  +RD +G
Sbjct:    8 SGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVGEHQRDAVG 142          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.047e-45
Identity = 88/123 (71.54%), Postives = 102/123 (82.93%), Query Frame = 1
Query:  238 AGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGD-TKGSARGGD 603
            A   ++SGG +       REQDR+LPIAN+SRIMKKALPAN KI+KDAK+TVQECVSEFISFIT EASDKCQ+EKRKTINGDDLLWAM TLGFEDY++PLK YL +YRE+EG+ T  + R GD
Sbjct:    2 ADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 1
Query:  253 ESGGEQSPHAGGV-REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTI 627
            E+GG      GGV +EQDR+LPIANI RIM++A+P NGKIAKD+K++VQECVSEFISFITSEASDKC KEKRKTINGDDL+W+M TLGFEDY++PLK YL  YRE EGDTKGS R  +   K+D +
Sbjct:    9 ENGGGGG--GGGVGKEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGS-RASELPVKKDVV 131          
BLAST of CB290513 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 82/152 (53.95%), Postives = 105/152 (69.08%), Query Frame = 1
Query:  223 APTSPAGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLN 678
            A T+P   S ++    + +    +EQDR+LPIAN+ RIMKK LP NGKI+KDAK+TVQECVSEFISF+T EASDKCQ+EKRKTINGDD++WA+ TLGFEDY+ PLK YL +YR+ EG+   S +      ++  I      N Q+  Q   N
Sbjct:   16 AETNPGSPSSKTNNNNNNN----KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQNHHNYQFQEQDQNN 163          
The following BLAST results are available for this feature:
BLAST of CB290513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB8_ARATH2.743e-6276.07Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYBA_ARATH8.825e-6176.47Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB_MAIZE2.839e-5970.00Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ3.139e-5866.67Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB1_ARATH5.011e-5676.39Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB2_ORYSJ1.971e-5264.24Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB2_ARATH1.368e-4565.93Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB3_ARATH3.047e-4571.54Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB4_ORYSJ4.865e-4369.84Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]
NFYB7_ARATH2.952e-4053.95Nuclear transcription factor Y subunit B-7 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290513 ID=CB290513; Name=CB290513; organism=Citrus sinensis; type=EST; length=697bp
GATCATCCTCCCATCTCTCCCTCCCTCTCTTCTCCATCGTCAGATTTTCT
TTCTCCTTAAAAACCAAAAACCAAAATCAAATCAAATTAAACCAAAAAAA
AAACTATTAAAAATAAACAGATCATAATTCATAACCAATCGCCACCTCCC
TCTCCCCCCTTCTCCAAACTCGCGCGCCAAATACAAAAACTCTGGGGATT
TTATTGGTCGGAGATGGCGGAAGCACCGACGAGTCCGGCGGGAGGTAGCC
ACGAGAGCGGGGGAGAGCAGAGCCCGCACGCTGGGGGAGTGAGAGAGCAG
GACAGGTATTTGCCAATAGCTAACATTAGCAGGATCATGAAGAAGGCTTT
GCCTGCTAATGGCAAGATCGCTAAGGATGCTAAGGATACTGTACAGGAAT
GTGTCTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGT
CAGAAGGAGAAGAGGAAGACAATTAATGGGGATGATTTGCTCTGGGCAAT
GGCAACTCTGGGTTTTGAAGATTATATTGATCCTCTTAAGGCATACCTTA
TGAGGTACAGGGAGATGGAGGGTGACACCAAAGGATCTGCTAGGGGTGGG
GATGGATCTGCTAAAAGGGACACGATTGGAGCTCTGCCTGGCCAAAATGC
ACAGTATGCTCTTCAGGGTCCACTCAACTATGTTAATCCCCAGGCAC
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