CB290515

Overview
NameCB290515
Unique NameCB290515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11532 contig Csv1_Contig11532:159..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290515 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.997e-72
Identity = 140/254 (55.12%), Postives = 180/254 (70.87%), Query Frame = 3
Query:   66 MACSSAALRTISSASVKLANSTSLTKSSSIL-VPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 818
            M  +S+A  +IS  +++  +    +  S+ L      +N  + +  P L        +     F     ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAG+C+LI++ PEKKGDR+EA+YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L GK V+P   V+P+  A+A +PGA I NFTN
Sbjct:    1 MIMASSAAASISMITLRNLSRNHQSHQSTFLGFSRSFHNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254          
BLAST of CB290515 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.454e-71
Identity = 143/255 (56.08%), Postives = 180/255 (70.59%), Query Frame = 3
Query:   66 MACSSAALRTISSASVKLANSTSLTKSSSILVPFK-LNNPSLITQCPHLQAATSCNFTVPKRSFTCR--SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 818
            MA S+ +L++IS  ++   +       SS+L   K   N  + +        +S  FT  K     R  SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEKKG+R+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct:    1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGISSNGSDFSYPSS--FTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253          
BLAST of CB290515 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.899e-71
Identity = 142/256 (55.47%), Postives = 184/256 (71.88%), Query Frame = 3
Query:   66 MACSSAALRTISSASVK-LANSTSLTKSSSILVPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANS---SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 818
            MA S+ +L++IS  ++  L+ S    +SS +       N  + +  P   + TS  FT  K+    R+ + +   +++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEK GDR+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P   + NFTN
Sbjct:    1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTS--FTPKKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254          
BLAST of CB290515 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.230e-71
Identity = 147/261 (56.32%), Postives = 184/261 (70.50%), Query Frame = 3
Query:   66 MACSSAALRTISSASVKLANSTSLTKSS--SILVPFK--LNNPSLITQCPHL----QAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 818
            MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P      ++ TS N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KRVGITAG+C+LI++ PEK GDR+EA+YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   V+P+P AKA EP   I NFTN
Sbjct:    1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTTSKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258          
The following BLAST results are available for this feature:
BLAST of CB290515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH4.997e-7255.12Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.454e-7156.08Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH1.899e-7155.47Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
AOC3_ARATH4.230e-7156.32Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290515 ID=CB290515; Name=CB290515; organism=Citrus sinensis; type=EST; length=819bp
GCCCTAGGCCCAAACAGTCAAACACTCATTTAACAACAGAAATTATCAGC
AAAAGATTATCCCCAATGGCTTGTTCAAGCGCTGCTTTGAGAACCATCTC
TTCTGCTTCTGTCAAGCTAGCCAATTCAACATCACTAACCAAATCATCAT
CAATTTTAGTACCATTTAAGCTGAATAATCCTTCTCTAATCACTCAATGC
CCCCACCTTCAAGCCGCCACAAGCTGCAACTTCACAGTACCCAAAAGATC
TTTCACTTGCAGAAGCCAAGCTAACTCATCAGATGATCCCAGACCCACCA
AGGTTCAAGAACTTCATGTGTATGAGATCAACGAGCGAGATCGTGGCAGT
CCAGCTTATCTTCGCTTGAGCCAGAAACCTGTGAATTCACTTGGTGATCT
TGTCCCTTTTAGCAACAAATTATATACTGGAGACCTGCAAAAGAGGGTGG
GAATAACAGCGGGTATATGCATTTTGATCGAAAACAAACCAGAAAAGAAA
GGTGACCGATATGAAGCAACTTACAGCTTCTACTTTGGAGACTATGGTCA
CATAGCTGTGCAAGGACCGTATTTGACCTATGAGGACACTTATCTGGCTG
TGACTGGTGGATCCGGCATCTTCGAGGGAGTGTATGGGCAGGTTAAGCTG
CAGCAACTTGTGTTTCCTTTTAAGCTGTTTTACACATTTTATTTGAAGGG
CATTAAGGACTTGCCAGAAGTGCTTCTGGGGAAGCCGGTGGATCCGCACC
CTGGTGTTGAGCCCTCCCCTGCTGCTAAAGCTTGTGAGCCTGGTGCAGCC
ATTGACAATTTCACTAATT
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