CB290516

Overview
NameCB290516
Unique NameCB290516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9962 contig Csv1_Contig9962:37..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42
Identity = 90/166 (54.22%), Postives = 105/166 (63.25%), Query Frame = 2
Query:  149 DPYS-NMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDS-SNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAV 640
            DPY+ +   SP               MGFF++YIRHC+ +   SV                  LD E I+TFPTFVYSEVKT K+GKGALECA+CLNEFEDDETLRL+PKCDHVFHP CI AWL+ H TCPVCR+NLA    E TP+P  +   E DLEAQ  +AV
Sbjct:   33 DPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA----EQTPEPEVV--VETDLEAQQQSAV 192          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.775e-41
Identity = 85/166 (51.20%), Postives = 103/166 (62.05%), Query Frame = 2
Query:  131 EPPGSVDPYSNMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDSSNS-VIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQ 625
            +P  +  PY+  + SP               MGFFSIY RHCS   ++ V                  LD  V++TFPTF+YS+VKT K+GKG LECA+CLNEFEDDETLRL+PKCDHVFHP CIDAWLE+H TCPVCR+NLA +  E   +  E G +E DLE Q
Sbjct:   32 QPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAE--GESVEPGGTEPDLELQ 195          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.091e-34
Identity = 69/120 (57.50%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  224 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXX---LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574
            +GFFS+YIR C +    +                     LD  +I+TFPTF YS VKTL++GK ALEC+VCLNEFEDDETLRLIPKC HVFHP CIDAWL SHTTCP+CR++L   PGE+
Sbjct:   77 LGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGES 196          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.701e-32
Identity = 70/143 (48.95%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  149 DPYSNMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDSSNSV-IXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574
            D      FSP               +G  S+Y+R C   +  +                   LD  VI+TFPTF YS VKTL++GK ALEC VCLNEFEDDETLRLIP+C HVFHP CIDAWL S TTCP+CR+NL   PGE+
Sbjct:   28 DDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGES 170          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.028e-29
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580
            L++EVI++FPTF+YSEVK LK+GKG +ECA+CL+EFED ETLR +P C H FH  CID WL S +TCPVCR+NL+ +PGE+ P
Sbjct:   95 LEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGESYP 177          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.994e-28
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQND 631
            L++E++++FP F+YSEVK LK+GKG +ECA+CL+EF D ETLR +P C H FH  CID WL S +TCP CR+NL+ +PGE+ P P        DLE  N+
Sbjct:   95 LEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGESYPYPI------TDLETGNE 188          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.519e-28
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  227 GFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL---ASEPGE 571
            G  S+YIRHC+ S+                     LD  V+++FP F YS VK  K+G   LECA+CLNE ED ET+RL+P C+H+FH +CID WL SH TCPVCRSNL   +++PG+
Sbjct:   60 GLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27
Identity = 50/79 (63.29%), Postives = 66/79 (83.54%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 568
            L ++VI++FP+F+YS+VK LK+GKG +ECA+CLNEFED+ETLRL+P C H FH  CID WL S +TCPVCR++L  +PG
Sbjct:  100 LGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPG 178          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPS---ELGSSEVDLEAQND 631
            +D++VI++FP F+YSEVK  K+G G +ECA+CL EFED+E LR +P C H FH  CID WL S +TCPVCR+NL+ + G++ P PS   E G+++  ++   D
Sbjct:   92 IDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFPHPSMDVETGNAQRGVQESPD 194          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            LD E I+TFPTF+YSEVK +++GKG +ECAVCL EFEDDETLRL+P C HVFH +C+D WL  H+TCP+CR++L
Sbjct:  107 LDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180          
The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL5H_ARATH2.089e-4254.22RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL3B_ARATH8.775e-4151.20RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL1N_ARATH6.091e-3457.50RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL1C_ARATH5.701e-3248.95RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL4C_ARATH2.028e-2965.06Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL4B_ARATH4.994e-2854.00Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]
ATL4O_ARATH8.519e-2848.31RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL1H_ARATH1.453e-2763.29RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL4D_ARATH2.479e-2750.49Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
ATL2G_ARATH2.479e-2767.57RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ca03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bp
GCCCTTGGCAATAATGGGGTCACGACTCTTACCCTACTCCGCCAAACATG
GGACCAATCCCCTTTCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCG
CTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGA
CCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCATAATAATCGTCG
TGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGC
CACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGG
CAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCG
ACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGC
AAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGA
AACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCA
TCGACGCCTGGCTTGAATCGCACACCACGTGTCCTGTTTGCCGCTCGAAT
TTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTC
ATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGA
CTCCACAAGAAACACAACCACAGCCACAAGGCTCACAACCACCGGAACCT
CAAGTTATCAGCGTCAACTTTGCTAATCAAACGCTTAATAGGAACCGT
back to top