CB290522

Overview
NameCB290522
Unique NameCB290522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6032 contig Csv1_Contig6032:54..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 6.706e-92
Identity = 153/206 (74.27%), Postives = 174/206 (84.47%), Query Frame = 1
Query:  154 QKPKSRPNPAFKLPHRHTRYYKPVNRGVIASDGDRGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQEGKTREDILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCR 771
            +KP+S  NPA KLPH  TRYYKPV  GVI+SDGDR + IG+SGVSY+LPGAPFEFQ+SY+ETP+ KP+ IREPAF+PF PPTMPRPWTGK PL      IPLFDSFNPP  GK GVK+VEMPGP P G+YP+EG  RE++LGEPLKRWE  ML+KP + DNRQVNLGRDG THNMLELIHSHWKRRRV K++CKGVPTVDM+NVCR
Sbjct:   61 KKPQS--NPALKLPHHRTRYYKPVKEGVISSDGDRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCR 264          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.122e-61
Identity = 118/211 (55.92%), Postives = 145/211 (68.72%), Query Frame = 1
Query:  148 KEQKPKSRPNPAFKLPHRHTRYYKPVNRGVIASDGDR---GVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQ-EGKTREDILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVC 768
            K  +  +  +PAF    R      P+      +D D    GV + + G+SYRL GAPFEFQYSYTE P+A+P+A+RE  F+PFGP   PRPWTG++PL      +P FDSF  P PGKKGVK V+ PGPF  G  P+ +  +REDILGEPL + E+S LVK  LK  RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV T+DMDN+C
Sbjct:   41 KRHRRAATSHPAFSAAARGRAKKIPI------ADTDEPAAGVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVALREAPFMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNIC 245          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF1P_ORYSJ (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.038e-60
Identity = 110/172 (63.95%), Postives = 132/172 (76.74%), Query Frame = 1
Query:  259 GVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQ-EGKTREDILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCR 771
            GV + E G++Y L GAPFEFQYSYTETP+A+P+A+RE  FLPFGP   PRPWTG++PL      +P FDSF  P PGKKGVK V+ PGPF  G  P+ +  +RE++LGEPL + E+  LVK  LK  RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV TVDMDNVC+
Sbjct:   75 GVRVTERGLAYHLDGAPFEFQYSYTETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQ 246          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.615e-53
Identity = 106/221 (47.96%), Postives = 136/221 (61.54%), Query Frame = 1
Query:  175 NPAFKLPHRHTRYYKPVNRGVIASDGD-------------RGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPL---------XXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKY-PQEGKTREDILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVC 768
            NPAF+  H  T Y KPV     A +G+             R V +G SG+S+RLPGAPF+FQ+SY+E P+A PLAIREPAFLPF PPTMPRPWTGK PL                PL       +     +  V       L +  P +G++RE++LGEPL   E+  LVKP +  NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C
Sbjct:   74 NPAFRAAHLRTAYRKPVPPAAAAGEGEALLAADPTDAASGRAVVVGPSGLSFRLPGAPFDFQFSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLC 294          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.615e-53
Identity = 112/218 (51.38%), Postives = 136/218 (62.39%), Query Frame = 1
Query:  163 KSRPNPAF----KLPHRHTRYYKP------------VNRGVIASDGDRGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQEGKTREDILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVC 768
            +SR  P+      +P R ++Y KP            V       D    V + E G++Y + GAPFEF+YSYTETP+ KPL +REPA+ PFGP TM RPWTG+ PL         FDSF  P  GKKG+K V+ PGPF  G  P+   ++E+ILGEPL + E+  LV   LK  RQ+N+GRDGLTHNML  IH  WKRRRV KIKCKGV TVDMDNVC
Sbjct:   86 RSRGTPSLPSARSIPGRRSKYSKPDSGPNRPKNKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVC 303          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF2P_ORYSJ (CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.698e-53
Identity = 105/221 (47.51%), Postives = 138/221 (62.44%), Query Frame = 1
Query:  175 NPAFKLPHRHTRYYKPVNRGVIASDGD-------------RGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPL---------XXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKY-PQEGKTREDILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVC 768
            NPAF+ PH  T Y KPV     A +G+             R V +G SG+S+RLPGAPF+F++SY+E P+A P+AIREPAFLPF PPTMPRPWTGK PL                PL +     +     +  V       L +  P +G++RE++LGEPL   E+  LVKP +  NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C
Sbjct:   70 NPAFRAPHLRTAYRKPVPPVAAAGEGEALLAADASDAADGRAVVVGPSGLSFRLPGAPFDFRFSYSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLC 290          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF1M_ORYSJ (CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  307 PFEFQYSYTET-PQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQ-EGKTREDILGEPLKRWEISMLVKPLLKDN--RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVC 768
            PF+F++SYTE+ P  KP+ +REP + PFGP  + RPWTG   L        L D+            H + P P    +  +   + RE +LGEPL   E + LV    K    +Q+NLGRDGLTHNML  IH+HWK    +++KC GVPTVDM NVC
Sbjct:   77 PFDFRFSYTESSPGDKPIGLREPKYSPFGPGRLDRPWTG---LCAPAVDTTLRDA------------HADDPAPAAERELEEARRRERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVC 219          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF2M_ORYSJ (CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24
Identity = 62/158 (39.24%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  307 PFEFQYSYTET-PQAKPLAIREPA-FLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQEGKTREDILGEPLKRWEISMLVKPLLKDN--RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVC 768
            PF+F+YSY+ET P  +P+  REP  F PFGP  + RPW G                              E  G            +RE++LGEPL   E++ LV+     +  RQ+NLG+ G+THNM++ IH+HWKR   ++IKC GVPT+DMDN+C
Sbjct:   80 PFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAA----------------------AAARGEGAGA--------AATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNIC 207          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF1M_ARATH (CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.067e-23
Identity = 69/200 (34.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:  175 NPAFKLPHRHTRYYKPVNRGVIASDGDRGVTIGESGVSYRLPGAPFEFQYSYTET-PQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQEGKTREDILGEPLKRWEISMLVKPLL--KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNV 765
            NP F   + + +  KP  R   + +G + V              PF+F++SYTE+    +P+ +REP + PFGP  + R WTG               + NP +    GV+  ++          +  K RE I G  L   E   LV+     K  RQVNLGRDGLTHNML  +++HWK    +++KC GVPT+DM NV
Sbjct:   50 NPDFNQKNNNKKKPKPQYRPPSSLEGVKTVH----------SDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGV-----------CAPAVNPKVESVDGVEDPKLE--------EKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNV 220          
BLAST of CB290522 vs. ExPASy Swiss-Prot
Match: CAF2M_ARATH (CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.129e-22
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  307 PFEFQYSYTET-PQAKPLAIREPA-FLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGKKGVKHVEMPGPFPLGKYPQEGKTREDILGEPLKRWEISMLVKPLLKDN--RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVC 768
            PF+F+YSY+ET P+ +P+  REP  F PFGP  + R WTG   L             +P +   + V+                   R  +LGE L   E++ L++     +  RQ+NLG+ G+THNM++ IH+HWK+   ++IKC GVPT+DMDN+C
Sbjct:   78 PFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALA------------SPEIDQSQWVEE------------------RARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNIC 205          
The following BLAST results are available for this feature:
BLAST of CB290522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CAF2P_ARATH6.706e-9274.27CRS2-associated factor 2, chloroplastic OS=Arabido... [more]
CAF1P_MAIZE6.122e-6155.92CRS2-associated factor 1, chloroplastic OS=Zea may... [more]
CAF1P_ORYSJ3.038e-6063.95CRS2-associated factor 1, chloroplastic OS=Oryza s... [more]
CAF2P_MAIZE1.615e-5347.96CRS2-associated factor 2, chloroplastic OS=Zea may... [more]
CAF1P_ARATH1.615e-5351.38CRS2-associated factor 1, chloroplastic OS=Arabido... [more]
CAF2P_ORYSJ4.698e-5347.51CRS2-associated factor 2, chloroplastic OS=Oryza s... [more]
CAF1M_ORYSJ1.165e-2743.67CRS2-associated factor 1, mitochondrial OS=Oryza s... [more]
CAF2M_ORYSJ5.985e-2439.24CRS2-associated factor 2, mitochondrial OS=Oryza s... [more]
CAF1M_ARATH5.067e-2334.50CRS2-associated factor 1, mitochondrial OS=Arabido... [more]
CAF2M_ARATH1.129e-2237.34CRS2-associated factor 2, mitochondrial OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290522 ID=CB290522; Name=CB290522; organism=Citrus sinensis; type=EST; length=771bp
GCTGAAACTGAACTTCAAATGCGGATTCTAGCTTCGCTACCAGACGGTAA
CCTCTTCGCATTCCTTCCGTCAACTCCACCTCCAAGGGACCCCAGGTTGC
CGCCACCCTCCACGTCACCACCCATCCCCGTTCCTAAATATCCCCCAAAA
GAACAAAAACCCAAATCTAGACCCAATCCGGCCTTCAAGCTCCCTCACCG
TCATACACGCTACTACAAGCCCGTCAATCGGGGAGTCATCGCATCAGATG
GCGACCGCGGTGTTACCATCGGTGAGTCCGGCGTATCCTATCGGCTACCG
GGGGCTCCATTCGAGTTCCAATACAGTTACACAGAGACTCCACAAGCTAA
ACCCTTGGCAATCCGCGAACCGGCTTTCTTGCCTTTCGGTCCACCCACGA
TGCCGCGGCCTTGGACCGGAAAACAACCGTTGAAGAAGTCTAAGAAAAAA
ATCCCGCTCTTTGACTCGTTTAACCCGCCGCTGCCCGGCAAAAAGGGCGT
GAAACACGTGGAAATGCCGGGGCCGTTTCCTCTCGGGAAGTATCCACAAG
AAGGGAAGACGAGAGAGGATATTCTCGGCGAGCCATTGAAGAGGTGGGAA
ATTAGCATGCTTGTTAAGCCTCTTTTGAAGGATAATCGTCAAGTTAACCT
TGGAAGAGACGGATTGACGCATAATATGCTGGAGCTGATACATTCCCATT
GGAAGCGGCGTCGTGTCATCAAAATTAAATGCAAAGGTGTTCCTACTGTC
GATATGGATAATGTTTGCCGC
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