CB290526

Overview
NameCB290526
Unique NameCB290526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12810 contig Csv1_Contig12810:104..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290526 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.558e-56
Identity = 116/204 (56.86%), Postives = 149/204 (73.04%), Query Frame = 1 
Query:  145 MSKLFALSGSDDFCPGGPIYPNPKESGLLLPLGPNVDVYFRARKRSRISAPFVYSEERFEQKQVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSV 756
            MS++F+ +G +DF   G IYPNPK++ LLL LG   DVYF   KRSR+ AP ++S   FE+K VSI+VLPDECLFEIFRRL G +ERSACA VSK+WL+L+S+I            +K++++ S   +   + +G LSRSL+GKKATD+RLAAIAVGTA RGGLGKLSI G+NS + V+  GLR+I R CPSL  LSLWN S++
Sbjct:    1 MSQIFSFAGENDFYRRGAIYPNPKDASLLLSLGSFADVYFPPSKRSRVVAPTIFSA--FEKKPVSIDVLPDECLFEIFRRLSGPQERSACAFVSKQWLTLVSSIR-----------QKEIDVPSKITEDGDDCEGCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAK-VSDLGLRSIGRSCPSLGSLSLWNVSTI 190
[Close]
BLAST of CB290526 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.994e-48
Identity = 110/204 (53.92%), Postives = 135/204 (66.18%), Query Frame = 1 
Query:  145 MSKLFALSGSDDFCPGGPIYPNPKESGLLLPLGPNVDVYFRARKRSRISAPFVYSEERFEQKQVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSV 756
            MS +F  SG +D   GG +Y +P         G    VY+ ARKR R++A   YS   FE+KQ SI+VLP+ECLFEI RRL  G+ERSACA VSK WL+LLS+I R E+      +E  V+ V + E       G+LSRSLEGKKATD+RLAAIAVGT+SRGGLGKL I G+     VT  GL A+A GCPSLR++SLWN  +V
Sbjct:    1 MSGIFRFSGDEDCLLGGSMYLSP---------GSCPGVYYPARKRLRVAATSFYSG--FEEKQTSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLSSISRSEV------NESSVQDVEEGE-------GFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAVAHGCPSLRIVSLWNLPAV 180
The following BLAST results are available for this feature:
BLAST of CB290526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EBF1_ARATH7.558e-5656.86EIN3-binding F-box protein 1 OS=Arabidopsis thalia... [more]
EBF2_ARATH1.994e-4853.92EIN3-binding F-box protein 2 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290526 ID=CB290526; Name=CB290526; organism=Citrus sinensis; type=EST; length=758bp
GCTCATGCATTCGTGTCTTGCCGATCTGAACGACGTCGTGTTAGCTCCTA
TCTTCGTCTGTGCTCTCTTTTTTGCTCTCTTTGGAGGGTTTTTGGGTCAG
GATCTCTTCAGATTTAACTTCCCGGGGTTTTTTGAGCTCTATTCATGTCA
AAGCTCTTCGCTTTATCTGGTTCTGATGATTTTTGCCCTGGGGGCCCAAT
ATACCCAAACCCCAAGGAGTCAGGTCTCTTATTGCCCCTTGGTCCTAATG
TGGATGTATATTTTCGTGCTCGCAAGAGGTCTCGCATCAGTGCTCCATTT
GTTTACAGTGAAGAGAGATTTGAGCAGAAGCAGGTCTCAATTGAAGTCCT
GCCAGACGAATGTCTCTTTGAGATCTTCAGACGATTGGATGGAGGCGAGG
AGAGGAGTGCCTGTGCTTCTGTTTCCAAGCGCTGGCTTTCTCTTTTAAGC
AATATCCACAGGGACGAAATCCGATCTTTGAAGCCTGAGTCTGAAAAGAA
GGTTGAATTAGTTTCTGATGCTGAAGATCCGGATGTTGAGCGTGACGGAT
ACCTTTCCAGGAGCTTGGAAGGAAAGAAGGCAACGGATATTAGACTTGCT
GCCATTGCTGTTGGTACTGCCAGCCGTGGAGGACTGGGCAAGCTTTCCAT
CCATGGAAACAATTCTACTCGTGGGGTGACAAGCGCTGGCCTTAGGGCTA
TTGCCCGTGGCTGCCCATCTTTAAGGGTTCTTTCCCTCTGGAATACATCT
TCTGTAGG
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