CB290532

Overview
NameCB290532
Unique NameCB290532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 6.292e-83
Identity = 150/175 (85.71%), Postives = 163/175 (93.14%), Query Frame = -3
Query:  293 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNRY 817
            VMQ MLGSWNKN  GGKH+GS+L QRV INEIAES+MAFNTNYKDTGLFGVYAVAK DCLDDL+YAIMYE TKLAYRVS+ADVTRARNQLKSSLLLH+DGTSP+AEDIGRQLLTYGRRIP AELFARID+VDAS VKRVAN++IYD+DIAI+A+GPIQ LPDYN FRRR YWNRY
Sbjct:  357 VMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDIAISAIGPIQDLPDYNKFRRRTYWNRY 531          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 5.576e-39
Identity = 77/174 (44.25%), Postives = 116/174 (66.67%), Query Frame = -3
Query:  296 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNR 817
            V   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ +A+  E  +L   VSE++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA  V+ V  ++IY +  AIAA+GPI+ LPD+N       W R
Sbjct:  315 VANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHAVQKEWMRLCTAVSESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCTKYIYGKSPAIAALGPIERLPDFNQICSNMRWTR 488          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.511e-39
Identity = 88/176 (50.00%), Postives = 118/176 (67.05%), Query Frame = -3
Query:  293 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNRY 817
            V  AM+GS+++ + G  H  S+LAQ V  + +A S  +FNT Y DTGL+G+Y  +   D LDDLA+  + E  +LA   SE +V  A+ QLK+SLLL +DGT+PVAE+IGRQ+L YGRR+   E+   +D+V    VKRVAN FIYDRD+AI A+GP++ LPDYN  R      RY
Sbjct:  291 VASAMIGSYDR-AAGNAHPSSKLAQIVAKHNLANSFTSFNTTYSDTGLWGIYIQSNNRDNLDDLAHFTVREWMRLATAPSEGEVAIAKQQLKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAVTVEDVKRVANEFIYDRDLAIVAVGPVECLPDYNRIRSAMNLLRY 465          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.242e-38
Identity = 76/174 (43.68%), Postives = 117/174 (67.24%), Query Frame = -3
Query:  296 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNR 817
            V   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA  V+RV  ++I+D+  AIAA+GPI+ LPD+N       W R
Sbjct:  315 VANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHVVQNEWKRLCTDVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSPAIAALGPIERLPDFNQICSNMRWIR 488          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.622e-38
Identity = 75/174 (43.10%), Postives = 116/174 (66.67%), Query Frame = -3
Query:  296 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNR 817
            V   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A  ++ V  ++IY+R  AIAA+GPI+ LPD+        W R
Sbjct:  315 VANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEPSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIEQLPDFKQICSNMCWLR 488          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.622e-38
Identity = 73/172 (42.44%), Postives = 116/172 (67.44%), Query Frame = -3
Query:  302 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYW 817
            V   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A  ++ V  ++IYD+  A+AA+GPI+ LPD+N       W
Sbjct:  316 VANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEPATVADMLHVVQKEWMRLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCTKYIYDKSPAVAAVGPIEQLPDFNQICSNMRW 487          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.119e-38
Identity = 75/174 (43.10%), Postives = 116/174 (66.67%), Query Frame = -3
Query:  296 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNR 817
            V   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A  ++ V  ++IY+R  AIAA+GPI+ LPD+   R    W R
Sbjct:  315 VANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLR 488          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.536e-36
Identity = 72/175 (41.14%), Postives = 110/175 (62.86%), Query Frame = -3
Query:  293 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNRY 817
            V  A++G ++    GG H+ S LA     N++ +S   FN +Y DTGL G + V     +DD+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  ++ + +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  306 VANAIIGHYDCTCGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTGLLGAHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.679e-35
Identity = 73/175 (41.71%), Postives = 108/175 (61.71%), Query Frame = -3
Query:  293 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNRY 817
            V  A++G ++    GG H+ S LA     N++ +S   FN  Y DTGL G + V     +DD+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  V+ V +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  306 VANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of CB290532 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.864e-35
Identity = 72/175 (41.14%), Postives = 110/175 (62.86%), Query Frame = -3
Query:  293 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASPVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRPYWNRY 817
            V  A++G ++    GG H+ S LA     N++ +S   FN +Y +TGL G + V     +DD+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI+ VDA  V+ V +++ YD+  A+A  GPI+ L DYN  R   +W R+
Sbjct:  306 VANAIIGHYDCTYGGGVHLSSPLASVAVANKLCQSFQTFNISYSETGLLGAHFVCDAMSIDDMIFFLQGQWMRLCTSATESEVTRGKNILRNALISHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIEEVDAQMVREVCSKYFYDQCPAVAGYGPIEQLSDYNRIRSGMFWLRF 480          
The following BLAST results are available for this feature:
BLAST of CB290532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPB_ARATH6.292e-8385.71Probable mitochondrial-processing peptidase subuni... [more]
MPPB_RAT5.576e-3944.25Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM9.511e-3950.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE1.242e-3843.68Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB1.622e-3843.10Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN1.622e-3842.44Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN2.119e-3843.10Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE7.536e-3641.14Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN1.679e-3541.71Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_RAT2.864e-3541.14Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ca12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290532 ID=CB290532; Name=CB290532; organism=Citrus sinensis; type=EST; length=819bp
TTTTTTTTTTTTTTTTTGCAGCTGAAAATTTATCATCATTCCCAGTTGTT
GCTTGAGCTGTTCAGCTCAAAGCAATGAAAATCCGAGGGCCAAATCACTG
AAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTTACAGAAGCAAGA
GCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAGCCTCTCCCAAGG
GGATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGAAATCTCCGCCCA
GGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAACTTAGTATCTAT
TCCAGTAGGGTCTGCGTCTGAACCAGTTGTAGTCGGGTAAACCTTGAATT
GGACCCATTGCAGCAATTGCGATATCCCTGTCGTAAATAAATCTGTTTGC
AACGCGCTTGACAGGGCTTGCATCTACGGAGTCTATCCTAGCAAACAATT
CAGCAAATGGGATTCTTCGACCATATGTAAGCAGCTGGCGTCCAATATCT
TCAGCTACAGGGCTTGTTCCATCAATGTGAAGCAACAGGGATGATTTCAA
CTGATTACGGGCACGAGTGACATCAGCTTCTGAAACCCGATAAGCTAACT
TGGTAGTCTCGTACATAATTGCATAGGCCAAATCATCTAAGCAATCCGGC
TTAGCAACAGCATAAACACCAAACAGACCAGTGTCTTTGTAGTTCGTGTT
GAAGGCCATCATGCTTTCTGCAATTTCATTAATGCCAACTCTCTGTGCCA
GCTCGGAACCCATGTGCTTTCCACCCACTGAATTTTTATTCCATGAACCC
AACATTGCCTGCATAACCA
back to top