CB290538

Overview
NameCB290538
Unique NameCB290538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5877 contig Csv1_Contig5877:23..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZNTB_DICDI (Protein zntB OS=Dictyostelium discoideum GN=zntB PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.787e-37
Identity = 76/171 (44.44%), Postives = 108/171 (63.16%), Query Frame = -3
Query:  264 KKKNKDEGGKDIMKKHRRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLEISLP 776
            K KNK +   D +          GI TA+G+SLHNFPEG+AV+L  +KG+ VGL L +AIA HNIPEG+AVA P++ AT SKW+AFK    SG  EP+G II   +F   ++P +++ +L +V G+M F+ + E+LP AF Y    ++  +  +GM F   S++FL   LP
Sbjct:  159 KSKNKKKSKDDYLNS-------VGIATAIGVSLHNFPEGVAVYLACLKGIDVGLPLMLAIAAHNIPEGMAVAAPIFSATGSKWKAFKYCLYSGLCEPVGAIIFGLIFKEYMTPYLIQSMLAAVAGIMVFMVIKELLPAAFKYVSVDESAFSNIIGMIFFFFSIHFLHSMLP 322          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_PELLD (Zinc transporter zupT OS=Pelodictyon luteolum (strain DSM 273) GN=zupT PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.604e-32
Identity = 69/143 (48.25%), Postives = 97/143 (67.83%), Query Frame = -3
Query:  279 GIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFL 707
            GI TA  I++HNFPEGMAVF  ++    +G+ +A  IALHNIPEG+AVA+P+YFAT+S+ +AF L+ LSG AEPLG ++   L    L+P +L  +L SV G+M +++L E+LP A +Y     A+  +  GMA M+ SL  L
Sbjct:  123 GIFTAAAIAIHNFPEGMAVFFSALSNQELGIVIASTIALHNIPEGMAVAVPIYFATKSRKRAFSLSFLSGLAEPLGALVGYTLLRPFLTPFVLGIVLASVSGIMVYISLDELLPSAEEYGEHHLAITGLIAGMAVMALSLLLL 265          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_CHLL2 (Zinc transporter zupT OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=zupT PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.854e-32
Identity = 68/143 (47.55%), Postives = 95/143 (66.43%), Query Frame = -3
Query:  279 GIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFL 707
            GI TA  I++HNFPEG+AVF  ++    +G+ +A  IALHNIPEG+AVA+P+YFAT+S+ +AF  + LSG AEPLG II   L    LSP +   +LG V G+M +++L E+LP A +Y     A+  + +GM  M+ SL  L
Sbjct:  123 GIFTAAAIAIHNFPEGLAVFFSALSNPDLGVVIAATIALHNIPEGMAVAVPIYFATKSRMKAFSYSFLSGLAEPLGAIIGYALLKPFLSPLVFACVLGGVAGIMVYISLDELLPAAEEYGEHHIAISGLILGMGVMAVSLLML 265          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_PROVI (Zinc transporter zupT OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=zupT PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.026e-31
Identity = 65/143 (45.45%), Postives = 95/143 (66.43%), Query Frame = -3
Query:  279 GIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFL 707
            G+ TA  I++HNFPEGMAVF  ++    +G+ +A  IALHNIPEG+A+A+P+YFAT+S+ +AF  + LSG AEPLG I+   +    LSP +   +L +V G+M +++L E+LP A +Y     A+  +  GMA M+ SL  L
Sbjct:  123 GLFTAAAIAIHNFPEGMAVFFSALSNQNLGIVIATTIALHNIPEGMAIAVPIYFATKSRKKAFTYSFLSGLAEPLGAIVGFAILKPWLSPPVFGSVLAAVAGIMVYISLDELLPTAEEYGEHHLAISGLIAGMAVMALSLLLL 265          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_CHLCH (Zinc transporter zupT OS=Chlorobium chlorochromatii (strain CaD3) GN=zupT PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.750e-31
Identity = 63/154 (40.91%), Postives = 104/154 (67.53%), Query Frame = -3
Query:  288 KDIMKKHRRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASL 749
            ++  +  +++++  G+ +AV I +HNFPEG+A F+  +    +G+++AVAIA+HNIPEG+AV+ P+++ATQS+ +AF L+ LSG AEP+G +I  +L  S  SP +   + G+V G+M +++L E+LP A +Y     A+  V  GM  M+ SL
Sbjct:  111 EECSENQKKKLMRMGLFSAVAIGIHNFPEGLATFMSGLSNPTLGVSIAVAIAIHNIPEGLAVSAPIFYATQSRKKAFILSFLSGLAEPVGALIGYFLLRSFFSPSLFGVVFGAVAGIMVYISLDELLPAAEEYGEHHFAIGGVIAGMVVMAISL 264          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_XANCP (Zinc transporter zupT OS=Xanthomonas campestris pv. campestris GN=zupT PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30
Identity = 68/148 (45.95%), Postives = 94/148 (63.51%), Query Frame = -3
Query:  264 GIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLEISLP 707
            G++TAV I+ HNFPEG+A F  +++   VG+ LA AIA+HNIPEG+A+A+PVYFAT++K+ AF  + LSG AEP+G  I   L  S LS  +   + G + GVM FL L E+LP A  YA   + V  +  GM  ++ SL     + P
Sbjct:  125 GLLTAVAITAHNFPEGLATFFATLESPAVGMPLAFAIAIHNIPEGIAIAVPVYFATRNKFYAFGASLLSGLAEPIGAGIGYLLLSSVLSEAVFGAVFGVIAGVMVFLALDELLPAAKRYAQGHETVYGLVSGMGTLAISLVLFRYAAP 272          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_STRMK (Zinc transporter zupT OS=Stenotrophomonas maltophilia (strain K279a) GN=zupT PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.254e-29
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  288 IITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASL 704
            ++T+V I+ HNFPEG+A F  +++   VG+ LA AIA+HNIPEG+A+A+PVYFATQ+K+ AF  + LSG AEP+G  +  +L   SLS      + G + GVM FL L E+LP A  YA   + V  +  GM  ++ SL
Sbjct:  126 LLTSVAITAHNFPEGLATFFATLESPSVGMPLAFAIAIHNIPEGIAIAVPVYFATQNKFYAFSASLLSGLAEPVGAALGYWLLSGSLSHATFGWVFGLIAGVMVFLALDELLPAAKRYAKGHETVYGLVAGMGTLAISL 264          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_STRM5 (Zinc transporter zupT OS=Stenotrophomonas maltophilia (strain R551-3) GN=zupT PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.638e-29
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  288 IITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASL 704
            ++T++ I+ HNFPEG+A F  +++   VG+ LA AIA+HNIPEG+A+A+PVYFATQ+K+ AF  + LSG AEP+G  +  +L   SLS      + G + GVM FL L E+LP A  YA   + V  +  GM  ++ SL
Sbjct:  126 LLTSIAITAHNFPEGLATFFATLESPSVGMPLAFAIAIHNIPEGIAIAVPVYFATQNKFYAFSASLLSGLAEPVGAALGYWLLSGSLSHATFGWVFGLIAGVMVFLALDELLPAAKRYAKGHETVYGLVAGMGTLAISL 264          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_COREF (Zinc transporter zupT OS=Corynebacterium efficiens GN=zupT PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.765e-29
Identity = 64/149 (42.95%), Postives = 95/149 (63.76%), Query Frame = -3
Query:  288 KHRRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASL 734
            + R +++ +G++TA+ IS+HNFPEG A F+  +   R+ + +AVAIA+HNIPEG+AVA+P+  AT S+ +A K ATLSG AEP G ++   L    L PE +     +V G+M F++L E+LP A        A+  +  GMA M+ SL
Sbjct:  116 ERRSRMMRAGVLTAIAISIHNFPEGFATFVAGLTDPRIAIPVAVAIAIHNIPEGIAVAVPIREATGSRGKALKWATLSGLAEPAGAVVGFILLMPFLGPEAMGLSFAAVAGIMVFISLDELLPTAISSGRHHTAIYGLVGGMAVMAVSL 264          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_XANAC (Zinc transporter zupT OS=Xanthomonas axonopodis pv. citri GN=zupT PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.811e-28
Identity = 66/148 (44.59%), Postives = 92/148 (62.16%), Query Frame = -3
Query:  264 GIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLEISLP 707
            G++TAV I+ HNFPEG+A F  +++   VG+ LA AIA+HNIPEG+A+A+PVYFAT++K+ A   + LSG AEP+G  I      S LS  +   + G + GVM FL L E+LP A  YA   + V  +  GM  ++ SL     + P
Sbjct:  125 GLMTAVAITAHNFPEGLATFFATLESPAVGMPLAFAIAIHNIPEGIAIAVPVYFATRNKFYAVGASLLSGLAEPVGAGIGYLALFSVLSDAVFGTVFGLISGVMVFLALDELLPAAKRYAQGHETVYGLVSGMGTLAISLVLFRFATP 272          
The following BLAST results are available for this feature:
BLAST of CB290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ZNTB_DICDI2.787e-3744.44Protein zntB OS=Dictyostelium discoideum GN=zntB P... [more]
ZUPT_PELLD4.604e-3248.25Zinc transporter zupT OS=Pelodictyon luteolum (str... [more]
ZUPT_CHLL27.854e-3247.55Zinc transporter zupT OS=Chlorobium limicola (stra... [more]
ZUPT_PROVI1.026e-3145.45Zinc transporter zupT OS=Prosthecochloris vibriofo... [more]
ZUPT_CHLCH1.750e-3140.91Zinc transporter zupT OS=Chlorobium chlorochromati... [more]
ZUPT_XANCP1.481e-3045.95Zinc transporter zupT OS=Xanthomonas campestris pv... [more]
ZUPT_STRMK1.254e-2946.76Zinc transporter zupT OS=Stenotrophomonas maltophi... [more]
ZUPT_STRM51.638e-2946.04Zinc transporter zupT OS=Stenotrophomonas maltophi... [more]
ZUPT_COREF4.765e-2942.95Zinc transporter zupT OS=Corynebacterium efficiens... [more]
ZUPT_XANAC1.811e-2844.59Zinc transporter zupT OS=Xanthomonas axonopodis pv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290538 ID=CB290538; Name=CB290538; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTCTGAGGAAAGACAATAATAAAAACCTCCTAAGC
CTTTGGGGTCTTTTTCTTGTCACATACATTTTCCATTTGAGCGTACAATT
TTGAGTTGAATCATAAGAATTACTATTTTTCATAGCAGCTCCACAGGTTG
GCTTTTTGGCTAAAGAACAGTAAGGCAGGCAGCAACCTTATGATAGAAAC
CATCGAGGCAGTTCAGGAATGTACAAATGTCATGACATGTGGCAGCTACA
AGCTCATCTCTGCCGGCAAGCTGATTTCAAGAAAATATAAGCTTGCAGAC
ATGAAAGCCATCCCAACGAATACAGCTTTCACGGCTTGCTTCTGACCCGC
ATAATCAAAGGCCAACGGCAGCATTTCATGCAAAGTTAGGAAGGCCATCA
CTCCCCCAACTGATCCTAGCAAACCCTCGAGAATTTCAGGACTTAAACTG
CTTGGAAATAAGTAGGCCACAATTATAACTCCAAGAGGCTCCGCAAAACC
AGAAAGAGTAGCCAATTTGAATGCCTGCCACTTGCTCTGTGTTGCAAAAT
AAACAGGAAGAGCAACAGCAACACCCTCAGGGATGTTGTGCAAAGCAATG
GCAACTGCCAAATTAAGGCCAACACGAAGGCCCTTCATTGATCCAAGAAA
TACGGCCATTCCCTCAGGAAAATTGTGCAAGCTTATGCCTACGGCTGTAA
TAATCCCACTAAAAAGAACTTGGCGACGATGCTTTTTCATAATGTCCTTA
CCCCCTTCATCCTTGTTTTTCTTTTTAC
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