CB290539

Overview
NameCB290539
Unique NameCB290539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290539_ssr185 microsatellite CB290539_ssr185:185..200. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CB290539 vs. ExPASy Swiss-Prot
Match: ZNTB_DICDI (Protein zntB OS=Dictyostelium discoideum GN=zntB PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 3 
Query:  429 LFVVLNEAPNLKVLGLLQGFAAGLMLSISFLDLAHNAINSIGFLKGNLWFFSGVIFFAIVANFIPEPSLAQGSD-------------LTSKKK------NKDEGGKDIMKKHRRQ--------------------------VLFSGIITAVGISLHNFPEGMAV 785
            L+V+  +  + K+LG L  F++G+M+ ISF+DL   +I  IGF   N+WFF G+IFFA++  F+P      G                +S+KK      + D  GKD  +K ++Q                          +   GI TA+G+SLHNFPEG+AV
Sbjct:   30 LYVIFIKQQSHKLLGHLLSFSSGVMIYISFMDLLPESIAEIGFYNANIWFFVGIIFFAVILRFVPHDHDESGDSNHAHSHNGASIEKHSSEKKEVVDDDDDDNNGKDKKQKQQKQKQQKQQQQQKQNIAKSKNKKKSKDDYLNSVGIATAIGVSLHNFPEGVAV 193
The following BLAST results are available for this feature:
BLAST of CB290539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZNTB_DICDI4.723e-1632.93Protein zntB OS=Dictyostelium discoideum GN=zntB P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290539 ID=CB290539; Name=CB290539; organism=Citrus sinensis; type=EST; length=786bp
GCACTAGGAGGAAACGAAATGGTGATTGATGAGTGATGATTGATGATTGA
TGAGCACAGCTGATAACATCTACTTAGCTTAGCGCAGTTGTTTTTGTCAT
TGCTTGCACCCCGCCATTGAACAATCTCTTTCTTCCACTGTACATATTCC
AAATATGCTCTCAAATAACGTTTTATTTAGTGTTATTAATTAATTAATTA
ATTCAGTGGAGTCGACAAAAAACCAAATCCAATTTGTTATTTTGATTTGG
TCAATTATTTTAAAACCCAAAACCCTATAAATATTATTCGCCAACCTCAA
ATACCCACTACAGTTTTTGAGTTTTTGAAGGGAAATATAGGACAGCCTAG
AGGAAGAAAATGGTTTCTCAGGTTTTGGTAGCTCTTGGGCTTTCACTTGT
GGGTGGATTGAGTACTTCTATTGGTGCACTTTTTGTTGTTCTTAATGAAG
CTCCCAATTTGAAGGTGCTTGGGCTTTTACAGGGTTTTGCTGCGGGTCTG
ATGCTGAGCATATCGTTTCTAGATTTGGCTCATAATGCCATAAACTCCAT
TGGCTTTTTGAAAGGGAACCTTTGGTTTTTTTCTGGTGTTATATTCTTCG
CAATCGTTGCCAATTTTATCCCTGAACCATCACTTGCTCAGGGTTCTGAT
CTAACAAGTAAAAAGAAAAACAAGGATGAAGGGGGTAAGGACATTATGAA
AAAGCATCGTCGCCAAGTTCTTTTTAGTGGGATTATTACAGCCGTAGGCA
TAAGCTTGCACAATTTTCCTGAGGGAATGGCCGTAT
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