CB290541

Overview
NameCB290541
Unique NameCB290541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:818..1682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290541 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 63/153 (41.18%), Postives = 78/153 (50.98%), Query Frame = -2
Query:  388 NDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQDGG-NLMNLWSFDDFPSTLGGVY 837
            N+ + G    V    +   YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M+LWS D+  S +GGV+
Sbjct:  237 NNNQFGMTNSVDAGCNGYQYFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHSMIGGVF 358          
BLAST of CB290541 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.487e-16
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  409 PFVPTADDT-PL---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 813
            PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct:  238 PFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360          
BLAST of CB290541 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 61/156 (39.10%), Postives = 79/156 (50.64%), Query Frame = -2
Query:  394 GYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 858
            G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L G
Sbjct:  255 GLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFMLEG 377          
The following BLAST results are available for this feature:
BLAST of CB290541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RA212_ARATH4.532e-1841.18Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ2.487e-1641.13Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH1.045e-1439.10Ethylene-responsive transcription factor RAP2-2 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290541 ID=CB290541; Name=CB290541; organism=Citrus sinensis; type=EST; length=865bp
TTTTTTTTTTTTTTTTTCCACAGAAGAGAATAAATAGATCCTAACATATT
GGCGGCCTGTGGTTAGGCAATCACAAAGACCATGAAAGAAGCAAATTAAC
AAGGATTACAATCATCCGGTTCAGTTTTTGATCACAAATCACACATAATC
ATCCATACAGTCACTAGATTGCAAAATGTTCAAAATGCTTCAAGTCTCAT
AGGTTAAAAGGAACCTAAACACCTATATACTAAGAATCTACTGAAAGCTC
CTGAGAGCAATCTCCACACATGGCTTGGCTTAAGCATGTCCAACAATTAA
GCACTGCATCTCCAACACAGATAGACAACCAGTCCTCAAAGATATAGCCT
TATTTACAAAACTAGCAAGCACATTAAAGTTTGCTCAATACACTCCCCCT
AGGGTAGAAGGGAAGTCATCAAAGCTCCAAAGGTTCATCAAGTTTCCACC
ATCCTGAGTGTTGTCACCATTGAGGAAGGCATCGAGGGAGGCCTCCCAGC
TTCCTTCAGGATACGGCATTGGCAAGAACTTCACCTGATTGTCAAAAGCC
AAAAGCTCATCAGACAGAGACTTTCCATTGTTATCCTGAACAGGCACAGC
ATTCTCAGAGTTAGATTTCAGCTTCTTCATCGGGTTTGCAACCGCATCCA
CAAACTGAGATTCATCAACTTCAGGGGTAGCTTCCAAAACAGATGAGATT
TCAGGAGTCTTTGGTGCCTGTTCTCCCCAGCCAAAGTCAGAACAATCAAA
GGAGTTACTGCCTTGGTCAGAGTTGAAGTACAAAGGAGTATCATCAGCTG
TTGGCACAAAGGGTTTGAATCCTAGTTCTCCATCATTAGGGAAGGAGCCC
AAATATCCCATACTG
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