CB290542

Overview
NameCB290542
Unique NameCB290542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:280..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.479e-50
Identity = 119/264 (45.08%), Postives = 154/264 (58.33%), Query Frame = 3
Query:   87 KPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFDYLNNSDQDYYNNVSILEEKPQV--NQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENA 806
            KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+ +
Sbjct:   78 KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDES 326          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.051e-45
Identity = 116/246 (47.15%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 KPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFDYLNNSDQDYYNNVSILEEKPQVNQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKS 791
            KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+L QN +         + N+  +EEK QV       S  N+ + G    V    +   YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS
Sbjct:   81 KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQNSNI-------SFENMCFMEEKHQV-------SNNNNNQFGMTNSVDAGCNGYQYFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS 308          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.713e-40
Identity = 100/214 (46.73%), Postives = 126/214 (58.88%), Query Frame = 3
Query:  153 AKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFDYLNNSDQDYYNNVSILEEKPQVNQYGYLGSFPNDGELGFKPFVPTADD-TPL---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPM 776
            A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP E P  A K    + + K+ PK+ +   +P++   F+ L N++   Y + +    KP V         P++      PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM
Sbjct:  108 AAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQ-KPTVKPAFNNLANANAFVYPSANFTSNKPFVQ--------PDN-----MPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM 304          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 65/153 (42.48%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  132 AVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD---------ETPAAAPKS--------------SVKANSQKSVPKACLSPVQPSLNQNFDYLNNSDQDYYNNVSILE 521
            AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD           P ++P+S              S    SQ S P  C+        QN  Y    D D    +S LE
Sbjct:   60 AVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLE 212          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.001e-19
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  156 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFDYL 476
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+        +    N  + + +  +  +   L    DY+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEEEADTKPGGNQNELISENQVESLSEDLMALEDYM 145          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  168 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA-----AAPKSSVKANSQKSVPKACLSPVQPSLNQNFDYLNNSDQDYYNNVSILEE 524
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E+       A     V+ N +  +  A +S    S   +F +  N+      +   LE+
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLLIDTQWLED 141          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 3
Query:   96 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSVKANSQKSV 419
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP         +P AA     KA++  SV
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.362e-16
Identity = 48/126 (38.10%), Postives = 61/126 (48.41%), Query Frame = 3
Query:  177 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFDYLNNSDQDYYNNVSILEEK-PQVNQYGY 551
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+    A+  S+                         +Y ++++Q YY+N     +  P  NQY Y
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPP--------------------NYYSSNNQIYYSNPQTNPQTIPYFNQYYY 193          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.362e-16
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  126 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSV-----------KANSQKSVPKACLSPVQPSLNQN 464
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P S+               S+ S     L P++P+ NQ+
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQS 287          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.779e-16
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   90 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 383
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++     P
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
The following BLAST results are available for this feature:
BLAST of CB290542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RAP22_ARATH5.479e-5045.08Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH9.051e-4547.15Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ6.713e-4046.73Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH2.833e-2242.48Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH5.001e-1943.93Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH9.432e-1839.52Ethylene-responsive transcription factor ERF073 OS... [more]
EF109_ARATH4.681e-1743.10Ethylene-responsive transcription factor ERF109 OS... [more]
EF115_ARATH1.362e-1638.10Ethylene-responsive transcription factor ERF115 OS... [more]
ABR1_ARATH1.362e-1638.71Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF110_ARATH1.779e-1642.86Ethylene-responsive transcription factor ERF110 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290542 ID=CB290542; Name=CB290542; organism=Citrus sinensis; type=EST; length=829bp
GTTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGAC
GTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGCCTTTTACTTT
CTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAAC
AAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATT
AGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAA
AGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTA
GGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTT
AACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAAGGC
AAACTCTCAGAAATCAGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGCCAA
GTTTGAACCAGAACTTCGATTACTTGAACAACTCCGATCAGGATTACTAC
AACAATGTGAGTATTCTGGAGGAGAAACCACAAGTGAATCAGTATGGATA
TTTGGGCTCCTTCCCTAATGATGGAGAACTAGGATTCAAACCCTTTGTGC
CAACAGCTGATGATACTCCTTTGTACTTCAACTCTGACCAAGGCAGTAAC
TCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAAAGACTCC
TGAAATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAATCTCAGT
TTGTGGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAACTCTGAG
AATGCTGTGCCTGTTCAGGATAACAATGG
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