CB290544

Overview
NameCB290544
Unique NameCB290544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:370..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 7.227e-80
Identity = 131/193 (67.88%), Postives = 151/193 (78.24%), Query Frame = -2
Query:  297 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 875
            KAVAN P SVAIE GG AFQLY SGIFTG+CGT+LDHGV AVGYGTENG DYWIV+NSWG SWGE+GY+RMERN+  + +GKCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDD YSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  253 KAVANQPVSVAIEAGGRAFQLYSSGIFTGKCGTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.780e-78
Identity = 127/200 (63.50%), Postives = 152/200 (76.00%), Query Frame = -2
Query:  276 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 875
            KAVA+ P S+AIE GG AFQLY+SGIF G CGT LDHGV AVGYGTENG DYWIV+NSWG SWGE+GY+RM RN+A + +GKCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  261 KAVAHQPISIAIEAGGRAFQLYDSGIFDGSCGTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 7.016e-67
Identity = 119/198 (60.10%), Postives = 137/198 (69.19%), Query Frame = -2
Query:  300 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 875
            KAVA+ P SVAIE GG  FQLY SG+F+GRCGTSLDHGV AVGYGT+NG DYWIV+NSWG  WGE+GY+RMERN+  T TGKCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC D  SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  266 KAVAHQPVSVAIEAGGREFQLYHSGVFSGRCGTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.163e-67
Identity = 113/201 (56.22%), Postives = 140/201 (69.65%), Query Frame = -2
Query:  273 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 875
            KAVA+ P S+A+E GG  FQ Y+SGIFTG+CGT++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+D YSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  142 KAVAHQPVSIALEAGGRDFQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.954e-57
Identity = 106/199 (53.27%), Postives = 123/199 (61.81%), Query Frame = -2
Query:  297 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 875
            KAVA+ P SVAI+ GG  FQLY+SG+FTGRCGT+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC D  +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  281 KAVAHQPVSVAIDAGGREFQLYDSGVFTGRCGTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.995e-34
Identity = 65/91 (71.43%), Postives = 75/91 (82.42%), Query Frame = -2
Query:  603 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KA++  P SVAIE GG  FQ Y+SGIFTG CGT+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  269 KAISYQPVSVAIEAGGRIFQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.886e-33
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = -2
Query:  603 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            +AV+  P SVAI+ GG AFQ Y+SGIFTG+CGT++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  224 RAVSYQPVSVAIDAGGRAFQHYQSGIFTGKCGTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29
Identity = 61/92 (66.30%), Postives = 69/92 (75.00%), Query Frame = -2
Query:  603 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            +AVAN P SV+IE  G  FQ Y  G+FTGRCGT LDHGV  VGYG T +G  YWIVKNSWG  WGE+GYIRM+R ++    GKCGIAMEASY
Sbjct:  253 QAVANQPISVSIEASGYGFQFYSEGVFTGRCGTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.206e-28
Identity = 61/92 (66.30%), Postives = 66/92 (71.74%), Query Frame = -2
Query:  603 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVAN P SVAI+ GG  FQ Y  G+FTG CGT LDHGV  VGYGT  +G  YW VKNSWG  WGE GYIRMER ++    G CGIAMEASY
Sbjct:  250 KAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDK-EGLCGIAMEASY 340          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.763e-28
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  603 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA+ P SVAIE    AFQLY+SG+ TG CG SLDHGV  VGYG+ +G DYWI++NSWG +WG++GY++++RN+     GKCGIAM  SY
Sbjct:  257 KAVAHQPVSVAIEASSQAFQLYKSGVMTGTCGISLDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPF-GKCGIAMMPSY 346          
The following BLAST results are available for this feature:
BLAST of CB290544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
ORYA_ORYSJ7.227e-8067.88Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.780e-7863.50Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ7.016e-6760.10Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSPL_SOLLC9.163e-6756.22Low-temperature-induced cysteine proteinase (Fragm... [more]
CYSP1_ORYSJ2.954e-5753.27Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH5.995e-3471.43Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA3.886e-3371.43Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CYSP_HEMSP1.528e-2966.30Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSEP_RICCO2.206e-2866.30Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CPR1_ARATH3.763e-2860.44Probable cysteine proteinase At3g19400 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290544 ID=CB290544; Name=CB290544; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAGATAACAACAATTTGTTTGTGCATTGCCCTTT
ATTCAACGCAGATAGATAACTTACAACGCTATATACCCAACCAACGTCCG
AATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAAT
GAAATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCAC
GAATATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACT
ATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGT
TTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCT
CATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGC
AGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCAT
CCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTT
GCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTG
GAGATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATG
GGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGC
CACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCC
ATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
ACAGCAGTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATAT
ACCCGATTCATATAACTGGAATGCCATGCCACCTCCTTCAATGGCAACAC
TCCCGGGGTGATTTGCAACTGCCTTT
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