CB290545

Overview
NameCB290545
Unique NameCB290545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2200 contig Csv1_Contig2200:110..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.684e-98
Identity = 174/252 (69.05%), Postives = 210/252 (83.33%), Query Frame = 2
Query:    8 LFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAY--NALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARF---GAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            +  VSSA+DMSI+SYD+ H   ++  R++ EVM+++EAWLVKHGKA   N+L EK++RFEIFK+NLRF+DEHN +N +Y++GL RFADLTN+EYRS +LGA+    G +RTSL      RY  RVG+ LP+S+DWRKKGAVAEVKDQG CGSCWAFSTI AVEGIN+IVTG LI+LSEQELVDCDTSYNEGCNGGLMDYAFEFII NGGIDT++DYPYK +DG+CD  RKNAKVVTID YEDVP   E++L+
Sbjct:   15 MVAVSSAVDMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSL------RYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCDTSYNEGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLK 260          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 2.605e-85
Identity = 157/246 (63.82%), Postives = 189/246 (76.83%), Query Frame = 2
Query:   23 SALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            +A DMSIVSY +         R+++E   ++  W  +HGK+YNA+GE+E+R+  F++NLR+IDEHN+       ++++GLNRFADLTNEEYR  +LG R   +R   + K S+RYL    EALP+SVDWR KGAVAE+KDQG CGSCWAFS IAAVEGIN+IVTG LISLSEQELVDCDTSYNEGCNGGLMDYAF+FII+NGGIDTE+DYPYK  D  CD  RKNAKVVTID YEDV  N E +LQ
Sbjct:   19 AAADMSIVSYGE---------RSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRR---ERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFDFIINNGGIDTEDDYPYKGKDERCDVNRKNAKVVTIDSYEDVTPNSETSLQ 252          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.790e-79
Identity = 146/229 (63.76%), Postives = 180/229 (78.60%), Query Frame = 2
Query:   68 SKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYN-EGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            +K+ + RT+DEV AM+E+WL+K+GK+YN+LGE E+RFEIFKE LRFIDEHN++ NR+YKVGLN+FADLT+EE+RS +LG   G+ +T    K SNRY PRVG+ LP  VDWR  GAV ++K QG CG CWAFS IA VEGINKIVTG LISLSEQEL+DC  + N  GCNGG +   F+FII+NGGI+TEE+YPY A DG C+   +N K VTID YE+VP N+E ALQ
Sbjct:   27 AKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLGFTSGSNKT----KVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNLDLQNEKYVTIDTYENVPYNNEWALQ 251          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.385e-78
Identity = 143/247 (57.89%), Postives = 185/247 (74.90%), Query Frame = 2
Query:   32 DMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYN----ALGEKEKRFEIFKENLRFIDEHNSENR--TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSN-RYLPRV-GEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            D SI++ D         WRTD+EV +++  W  +HGK  N     + +++KRF IFK+NLRFID HN +N+  TYK+GL +F DLTN+EYR ++LGAR    R   K+K  N +Y   V G+ +P++VDWR+KGAV  +KDQG+CGSCWAFST AAVEGINKIVTG LISLSEQELVDCD SYN+GCNGGLMDYAF+FI+ NGG++TE+DYPY+   G C+++ KN++VV+ID YEDVP  DE AL+
Sbjct:   23 DESIIN-DHLQLPSDGKWRTDEEVRSIYLQWSAEHGKTNNNNNGIINDQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDKSYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALK 268          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 292.352 bits (747), Expect = 1.809e-78
Identity = 145/229 (63.32%), Postives = 179/229 (78.17%), Query Frame = 2
Query:   68 SKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYN-EGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            +K+ + RT+DEV AM+E+WL+K+GK+YN+LGE E+RFEIFKE LRFIDEHN++ NR+YKVGLN+FADLT+EE+RS +L    G+ +T    K SNRY PRVG+ LP  VDWR  GAV ++K QG CG CWAFS IA VEGINKIVTG LISLSEQEL+DC  + N  GCNGG +   F+FII+NGGI+TEE+YPY A DG C+   +N K VTID YE+VP N+E ALQ
Sbjct:   27 AKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLRFTSGSNKT----KVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQ 251          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.027e-73
Identity = 136/225 (60.44%), Postives = 176/225 (78.22%), Query Frame = 2
Query:   86 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAID-GSCDTYR-KNAKVVTIDDYEDVPLNDEKALQ 748
            R + EV  M+E WLV++ K YN LGEKE+RF+IFK+NL+F+DEHNS  +RT++VGL RFADLTNEE+R+++L  +    + S+K++R   YL + G+ LPD VDWR  GAV  VKDQG+CGSCWAFS + AVEGIN+I TG LISLSEQELVDCD  + N GC+GG+M+YAFEFI+ NGGI+T++DYPY A D G C+  +  N +VVTID YEDVP +DEK+L+
Sbjct:   35 RNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFADLTNEEFRAIYLRKKMERTKDSVKTER---YLYKEGDVLPDEVDWRANGAVVSVKDQGNCGSCWAFSAVGAVEGINQITTGELISLSEQELVDCDRGFVNAGCDGGIMNYAFEFIMKNGGIETDQDYPYNANDLGLCNADKNNNTRVVTIDGYEDVPRDDEKSLK 256          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.141e-71
Identity = 138/250 (55.20%), Postives = 182/250 (72.80%), Query Frame = 2
Query:   20 SSALDMSIVSYDKTHESKS-SSWRTDDEVMAMFEAWLVKHGKAY-NALG-EKEKRFEIFKENLRFIDEHNS---ENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTS-YNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            ++A DMSI+SY+  H ++      T+ E  A ++ WL ++G    NALG E E+RF +F +NL+F+D HN+   E   +++G+NRFADLTNEE+R+  LGA+   +  +       RY     E LP+SVDWR+KGAVA VK+QG CGSCWAFS ++ VE IN++VTG +I+LSEQELV+C T+  N GCNGGLMD AF+FII NGGIDTE+DYPYKA+DG CD  R+NAKVV+ID +EDVP NDEK+LQ
Sbjct:   20 TAAPDMSIISYNAEHGARGLEEGPTEAEARAAYDLWLAENGGGSPNALGGEHERRFLVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNEEFRATFLGAKVAERSRAA----GERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVECSTNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDYPYKAVDGKCDINRENAKVVSIDGFEDVPQNDEKSLQ 265          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.141e-71
Identity = 132/223 (59.19%), Postives = 172/223 (77.13%), Query Frame = 2
Query:  104 MAMFEAWLVKHGKAYN----ALGEKEKRFEIFKENLRFIDEHNSENR--TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSN-RYLPRVG-EALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            M+++  W ++HGK+ +     + ++++RF IFK+NLRFID HN  N+  TYK+GL  FA+LTN+EYRS++LGAR    R   K+K  N +Y   V  + +P +VDWR+KGAV  +KDQG+CGSCWAFST AAVEGINKIVTG L+SLSEQELVDCD SYN+GCNGGLMDYAF+FI+ NGG++TE+DYPY   +G C++  KN++VVTID YEDVP  DE AL+
Sbjct:    1 MSIYLRWSLEHGKSNSNSNGIINQQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDKSYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYHGTNGKCNSLLKNSRVVTIDGYEDVPSKDETALK 223          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.797e-71
Identity = 130/242 (53.72%), Postives = 175/242 (72.31%), Query Frame = 2
Query:   20 SSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKAL 745
            +S+ D SIV Y            + D+++ +FE W+    KAY  + EK  RFE+FK+NL+ IDE N + ++Y +GLN FADL++EE++ M+LG +    R   + +    +  R  EA+P SVDWRKKGAVAEVK+QGSCGSCWAFST+AAVEGINKIVTG+L +LSEQEL+DCDT+YN GCNGGLMDYAFE+I+ NGG+  EEDYPY   +G+C+  +  ++ VTI+ ++DVP NDEK+L
Sbjct:   26 ASSHDYSIVGYSP------EDLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRD-EERSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCDTTYNNGCNGGLMDYAFEYIVKNGGLRKEEDYPYSMEEGTCEMQKDESETVTINGHQDVPTNDEKSL 260          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.419e-69
Identity = 129/246 (52.44%), Postives = 172/246 (69.92%), Query Frame = 2
Query:    8 LFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKAL 745
            L   + A D SIV Y   H + +      D+++ +FE+W+ +H KAY ++ EK  RFE+F+ENL  ID+ N+E  +Y +GLN FADLT+EE++  +LG      + S K + S  +  R    LP SVDWRKKGAVA VKDQG CGSCWAFST+AAVEGIN+I TG+L SLSEQEL+DCDT++N GCNGGLMDYAF++II  GG+  E+DYPY   +G C   +++ + VTI  YEDVP ND+++L
Sbjct:   22 LLCCAFARDFSIVGYTPEHLTNT------DKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLG--LAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCDTTFNSGCNGGLMDYAFQYIISTGGLHKEDDYPYLMEEGICQEQKEDVERVTISGYEDVPENDDESL 259          
The following BLAST results are available for this feature:
BLAST of CB290545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RD21A_ARATH2.684e-9869.05Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ2.605e-8563.82Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
ACTN_ACTDE2.790e-7963.76Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
GCP1_ARATH1.385e-7857.89Germination-specific cysteine protease 1 OS=Arabid... [more]
ACTN_ACTCH1.809e-7863.32Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CPR1_ARATH1.027e-7360.44Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
ORYB_ORYSJ2.141e-7155.20Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP4_BRANA2.141e-7159.19Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
XCP2_ARATH2.797e-7153.72Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
XCP1_ARATH3.419e-6952.44Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290545 ID=CB290545; Name=CB290545; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTT
ATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAG
GTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAA
CGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTA
GGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTG
AACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGG
TGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACC
GTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGG
AAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTG
CTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTA
CAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACA
TCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTT
CATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAAG
CCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACA
ATTGATGACTATGAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAA
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