CB290546

Overview
NameCB290546
Unique NameCB290546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:567..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 2.504e-108
Identity = 198/202 (98.02%), Postives = 198/202 (98.02%), Query Frame = -1
Query:  207 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 812
            KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRL REVVPGMIVTGMEVAEIDGAPRMGP FGAMMISGQKAAHLALKSLGQPNALDGTYVGGV PELIL
Sbjct:  144 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 5.404e-103
Identity = 186/202 (92.08%), Postives = 194/202 (96.04%), Query Frame = -1
Query:  207 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 812
            KPAH+FLDELGI+YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA GVK L+SIGMI+ VPGMKALDMN AEDAIVRL RE+VPGMIVTGMEVAEIDGAPRMGP FGAMMISGQKAAHLALK+LG PNALDG+YVGG+ PELIL
Sbjct:  140 KPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.989e-97
Identity = 175/202 (86.63%), Postives = 187/202 (92.57%), Query Frame = -1
Query:  207 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 812
            KPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCGHDGPFGA GVKRLKSIGMI+ VPGMKALDMN+AEDAIVRL REVVPGMIVTGMEVAEIDGAPRMGP FGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  137 KPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.988e-94
Identity = 171/202 (84.65%), Postives = 185/202 (91.58%), Query Frame = -1
Query:  207 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 812
            KPAH+FLDELG+ YDE ++YVVIKHAALFTST+MS LLARPNVKLFNAVA EDLIV+GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA GVKRL+ IGMI  VPGMKALDMN+AED IVRL REVVPGMIVTGMEVAEIDGAPRMGP FGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  143 KPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPNVKLFNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 8.647e-93
Identity = 166/191 (86.91%), Postives = 180/191 (94.24%), Query Frame = -1
Query:  240 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQPNALDGT 812
            +PAH+FLDELG+ YDE ++YVV+KHAALFTST+MS+LLARPNVKLFNAVA EDLIV+ GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA GVKRL+ IGMI  VPGMKALDMN+AED IVRL REVVPGMIVTGMEVAEIDGAPRMGP FGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  140 RPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLARPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.944e-60
Identity = 117/184 (63.59%), Postives = 143/184 (77.72%), Query Frame = -1
Query:  273 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALK 812
            KPA  FL E+G+ Y+++ NYVV+KHAALFTSTIMSK+L  PN KLFNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+  RE+VPG+IV GME++E+DGA RMGP FGAM++SG KAA  ALK
Sbjct:  130 KPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQLPNCKLFNATCVEDLITRPSKEGVRISGVVTNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.944e-60
Identity = 116/184 (63.04%), Postives = 143/184 (77.72%), Query Frame = -1
Query:  273 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALK 812
            KPA  FL E+G+ Y+++ NYVV+KHAALFTSTIMSK+L  PN+KLFNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+  RE+VPG+IV GME++E+DGA RMGP FGAM +SG KAA  ALK
Sbjct:  126 KPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQMPNIKLFNATCVEDLITRPSEEGVRIAGVVTNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.646e-59
Identity = 117/198 (59.09%), Postives = 145/198 (73.23%), Query Frame = -1
Query:  234 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQPNALDGTYV 812
            KPA +FL+E+G+ Y+++ +YVV+KHAALFTST+M++ LA PNVKLFNA A EDLIVK G     R+ GVVTNW LVS+NH  QSCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+  REV PGMIV GME++E DGA RMGP FG MM SG KAA  AL    +  A++  Y+
Sbjct:  131 KPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTLALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.916e-58
Identity = 111/201 (55.22%), Postives = 147/201 (73.13%), Query Frame = -1
Query:  231 KPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALKSLGQPNALDGTYVG 812
            KPA  FLD++G+ Y+++ N+VV+KHAALFTST++SK+LA PNVK+FNA A EDLI+K         R+ G VTNW LVS+NHD QSCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I    RE++PG+IV GME++E DG+ RMGP FGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  135 KPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFNATACEDLIIKPCPINPGVQRIAGCVTNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CB290546 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 4.483e-57
Identity = 110/187 (58.82%), Postives = 143/187 (76.47%), Query Frame = -1
Query:  273 KPAHIFLDELGIDYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAPGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPPFGAMMISGQKAAHLALK 812
            +PA +FL+ELG+ Y+E    NYVV+KHA+LFTST+MSK+L+ PNVKLFNA A EDLI +       ++ GVV NW LV+++HD  SCMDPN + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+  REV  G+I+ GME++EIDG  RMGP FGAM++SG KAA  ALK
Sbjct:  130 RPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATAVEDLITRPTENGNPQIAGVVVNWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
The following BLAST results are available for this feature:
BLAST of CB290546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_CITSI2.504e-10898.02Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL5.404e-10392.08Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.989e-9786.63Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE5.988e-9484.65Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE8.647e-9386.91Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH1.944e-6063.59Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.944e-6063.04Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO1.646e-5959.09Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA6.916e-5855.22Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_ASPOR4.483e-5758.82Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290546 ID=CB290546; Name=CB290546; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGACCGGAAAAAACACTTTATTCACAAAACCTCA
CAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATA
CAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGA
TGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGC
TGCAGCTAAGATCAGCTCAGGGGGAACGCCTCCCACATATGTACCGTCTA
ATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGC
CCCGATATCATCATTGCTCCAAATGGTGGCCCCATTCGAGGAGCACCATC
AATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCC
TGGGCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTC
ATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCC
AGGGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCG
CTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGAC
ACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTTTGACTAT
CAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTGGGGCGGGCCA
GGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATGCTTGATCACA
ACATAGTTGTCTTGCTCATCGTAGTCGATGCCAAGCTCGTCAAGGAAGAT
GTGGGCTGGTTT
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