CB290549

Overview
NameCB290549
Unique NameCB290549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:888..1528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.974e-50
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 315
            L SIGMIEEVPG+KALDMNSAEDAIVRLTREVVPGM VTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.926e-46
Identity = 92/105 (87.62%), Postives = 99/105 (94.29%), Query Frame = 1
Query:    1 ALWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 315
            +L SIGMI+ VPG+KALDMN AEDAIVRLTRE+VPGM VTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  247 SLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.688e-42
Identity = 87/104 (83.65%), Postives = 94/104 (90.38%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 315
            L SIGMI+ VPG+KALDMN+AEDAIVRLTREVVPGM VTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  245 LKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.866e-35
Identity = 76/98 (77.55%), Postives = 84/98 (85.71%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 297
            L  IGMI  VPG+KALDMN+AED IVRLTREVVPGM VTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  251 LQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.694e-34
Identity = 77/102 (75.49%), Postives = 86/102 (84.31%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 297
            L  IGMI  VPG+KALDMN+AED IVRLTREVVPGM VTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  248 LQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 219
            L S+G IE++ G++ LDMN AEDAIV+ TRE+VPG+ V GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  242 LVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.029e-18
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 219
            L S+  IE++ G++ LDMN AEDAIV+ TRE+VPG+ V GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  238 LVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 219
            L S+G ++++ G++ LDMNSAEDAIV+ TREV  G+ + GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  245 LVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.137e-16
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   10 SIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 261
            S G+ E +  ++ LDM  AED I   TRE++PG+ V GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  252 SAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CB290549 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    4 LWSIGMIEEVPGIKALDMNSAEDAIVRLTREVVPGMTVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 258
            L S  ++  +  ++ LDMN AED IV+ TREV PGM V GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  244 LASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CB290549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
THI4_CITSI5.974e-5097.12Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL8.926e-4687.62Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.688e-4283.65Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.866e-3577.55Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE2.694e-3475.49Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH4.175e-1965.28Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX6.029e-1863.89Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.754e-1761.11Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA1.137e-1650.00Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO1.642e-1551.76Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cb09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290549 ID=CB290549; Name=CB290549; organism=Citrus sinensis; type=EST; length=641bp
GCACTATGGAGTATCGGAATGATTGAGGAAGTGCCTGGAATCAAGGCACT
GGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGGTTG
TGCCTGGTATGACAGTTACCGGCATGGAAGTTGCCGAGATTGATGGTGCT
CCTAGAATGGGGCCAACATTTGGAGCAATGATGATATCGGGGCAGAAGGC
TGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTA
CATATGTGGGAGGTGTTCACCCTGAGCTGATCTTAGCTGCAGCTGATTCT
GCTGAGACTGCTGATGGTTAATTTGATAATAACAGGCATCATCACTCATC
AGCTGTGTGCATGCAAATAAACTCTGGCAAAAAAGTAGTTGTATTTAGGT
GGTTGTGATGGATGGTTGATGCGAATAATGAGATGATGTTGTGAGGTTTT
GTGAATAAAGTGTTTGTTTCCGGTCCATCATGCAACCTTTAATTTTAATT
TCTTTCTCCTCTTGTAAGAAACCGTTGTGAGTTTTTCGGGGGTGAATTTG
CAGTTGCGTATCTAGTCCTTGTTATCTGTATTATGTGTAAGACTGCCCTT
GGGCTGTTCCCTTTTAAAAACAAACAAAAAAAAAAAAAAAA
back to top