CB290550

Overview
NameCB290550
Unique NameCB290550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13836 contig Csv1_Contig13836:14..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.535e-94
Identity = 158/224 (70.54%), Postives = 180/224 (80.36%), Query Frame = -1
Query:  127 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVPY 798
            DGL LWDAIK+WVTDYV HYYPD+ L+ SDEELQ WW+E+R +GHGDKK EPWWPVLKT  DLI ++TTI WVTSGHHAAVNFGQY YGGYFPNRPTT R  + TEDP+DE  K F E PE  LL T+PSQ QAT VM  LD+LSTHSPDEEY+G++ E +W  +PVINAAFE+F+GKL  LEG+ID RN +  L+NR GAG V YELLKP SE GVTG GVPY
Sbjct:  669 DGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPY 892          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.209e-84
Identity = 140/223 (62.78%), Postives = 172/223 (77.13%), Query Frame = -1
Query:  130 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVP 798
            DGL +W +IKQW +DYV+ YY     V  DEEL+AWW E+RT GH DKK EPWWPV  T ++L++I+T I+WVTSGHHAAVNFGQY Y GYFPNRPT  R NI  E+  D++ K F+ +PE  LL + PSQ+QA KVMA LD+LS+HSPDEEY+G+  EPAW  +P++ AAFEKF G+L E EG ID RN +P+ +NR GAG VPYELLKPFSEPGVTG+G+P
Sbjct:  669 DGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIP 891          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.200e-76
Identity = 133/224 (59.38%), Postives = 161/224 (71.88%), Query Frame = -1
Query:  130 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVP 798
            DGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLSTHS DEEYLG E    W  D  + AA+  F  +L E+EG+ID RN D KL+NR GAG +PY+L+KPFS+ GVTG G+P
Sbjct:  713 DGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIP 936          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 5.486e-76
Identity = 132/224 (58.93%), Postives = 162/224 (72.32%), Query Frame = -1
Query:  130 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVP 798
            DGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLS+HS DEEYLG E    W  D  + AA++ F  +L E+EG+ID RN D KL+NR GAG +PY+L+KPFS+ GVTG G+P
Sbjct:  696 DGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIP 919          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.495e-69
Identity = 123/211 (58.29%), Postives = 152/211 (72.04%), Query Frame = -1
Query:  166 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKP 798
            DGL +WDAIKQW   YV HYYP  + +  DEELQAWWTE+RT GH DK+ EPWWP L + ++L + + TI+WVTSGHHAAVNFGQY   GY PNRPT AR N+ TE   D+  + F+E PE  LL+TFPSQ Q+  V+AILD+LSTHS DEEY+G   EPAW +D VIN AFE+F+    ++   +D  N DP  +NR+GAG VPY LL+P
Sbjct:  700 DGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDM-RDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRP 909          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.706e-65
Identity = 117/225 (52.00%), Postives = 153/225 (68.00%), Query Frame = -1
Query:  130 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYL--GKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVP 798
            DGL +W AIK  V  YV H+Y D   + SD ELQAWW EI+  GH DKK EPWWP L T +DL +I+T ++W+ SG HAA+NFGQY +GGY PNRPT  R  I  E  +D  ++ F+  P+ + L + P+Q+QATKVMA+ + LSTHSPDEEYL   +E++  W +D  +   F KF  +L+++E  I+ RN D KL+NR GAG  PYELL P S  GVTG+G+P
Sbjct:  690 DGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIP 912          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.550e-62
Identity = 115/224 (51.34%), Postives = 149/224 (66.52%), Query Frame = -1
Query:  130 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVP 798
            DGL LW AI+ WV  YV  YY + +L+++D ELQAW++E   VGH D +   WWP L T +DL+ +ITTI+W+ S  HAA+NFGQY YGGY PNRP   R  I   D SD ++  F+E P+    ++ PS +Q TK MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  ID RN DP  RNR GAG +PYEL+ P SEPGVT +GVP
Sbjct:  700 DGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLI--PDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVP 921          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.004e-61
Identity = 112/222 (50.45%), Postives = 146/222 (65.77%), Query Frame = -1
Query:  133 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGV 798
            DGL +WDAIKQW +DYV HYYP    +  DEELQ WWTE+RT GH DK+ EPWWP L   + L++++ TI+WVTS HHAAVNFGQY   GY PN P+ AR N+  E    E+   F   PE   L+T PSQ+Q   VMA LD+LS+H+ DEEY+G   EPAW+ D  ++ AF+ F+ K+ ++   ++  N D   RNR+GAG VPY LL+P +   +  K V
Sbjct:  701 DGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCE-MGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTV 921          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.713e-61
Identity = 114/224 (50.89%), Postives = 148/224 (66.07%), Query Frame = -1
Query:  130 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVP 798
            DGL LW AI+ WV  YV  YYP+ +L+++D ELQ+W++E   VGH D +   WWP L T  DL+ I+TT++W+ S  HAA+NFGQY YGGY PNRP   R  I   D SD ++  F+  PE    ++ PS  Q +K MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  I+ RNADP  RNR GAG +PYELL P SEPGVT +GVP
Sbjct:  693 DGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLI--PDESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVP 914          
BLAST of CB290550 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.231e-60
Identity = 108/223 (48.43%), Postives = 146/223 (65.47%), Query Frame = -1
Query:  130 DGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGTVPYELLKPFSEPGVTGKGVP 798
            DGL++W AIK WVTDY + YY     +  D ELQAWW E+R VGHGDKK+EPWWP ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++     P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAF++F  KL ++E  I  RN D  L NR+G    PY LL P SE G+TGKG+P
Sbjct:  636 DGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFM--PEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
The following BLAST results are available for this feature:
BLAST of CB290550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
LOX2_ARATH1.535e-9470.54Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU3.209e-8462.78Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ4.200e-7659.38Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ5.486e-7658.93Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU6.495e-6958.29Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH9.706e-6552.00Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH1.550e-6251.34Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX22_HORVU1.004e-6150.45Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH1.713e-6150.89Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX1_SOLTU3.231e-6048.43Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290550 ID=CB290550; Name=CB290550; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTACATTAACTGCAATTTATTTGACTCATTCTTGA
ACTCATTCTCAAAAGTTTTTATTGATACAACATTCGAGCGATTGCAACAA
CATTTTCAACTCTAGATAGAGATGCTGTACGGAACTCCTTTTCCTGTAAC
ACCAGGTTCCGAAAATGGCTTCAAGAGCTCATATGGCACCGTCCCAGCTC
CATTTCTATTCCTCAACTTGGGATCTGCATTCCTTGCATCAATAATCCCT
TCAAGCTCCATTAACTTGCCTCTAAACTTTTCAAATGCTGCATTTATAAC
CGGATCCTCACGCCATGCTGGCTCTATTTCTTTTCCTAAATACTCCTCAT
CAGGAGAATGAGTCGATAAAACATCAAGAATAGCCATAACTTTAGTAGCT
TGAATCTGGGAAGGGAAGGTATTCAAAAGTGCATTTTCAGGTTTTTCAAG
GAAGAATTTCCATTGTTCATCAGATGGATCTTCAGTGGCAATGTTGCATC
TTGCAGTGGTTGGCCTATTGGGGAAATAGCCTCCGTAAGTGTATTGGCCG
AAGTTAACAGCTGCGTGGTGACCAGATGTTACCCAAACAATAGTTGTGAT
GATTTCAATTAAATCCTTAGGGGTTTTCAAGACAGGCCACCAAGGTTCAT
GTTTCTTGTCACCGTGTCCCACAGTTCGAATTTCAGTCCACCAAGCTTGG
AGCTCTTCATCAGATTCTACAAGGCTTTTATCAGGGTAGTAGTGATTAAC
ATAATCGGTAACCCATTGTTTTATGGCATCCCAGAGATCAAGGCCATC
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