CB290556

Overview
NameCB290556
Unique NameCB290556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290556_ssr151 microsatellite CB290556_ssr151:151..165. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290556_ssr186 microsatellite CB290556_ssr186:186..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5898 contig Csv1_Contig5898:68..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH38_ARATH (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 6.664e-71
Identity = 141/223 (63.23%), Postives = 168/223 (75.34%), Query Frame = 2
Query:  113 PSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMS 778
            P+TE K+ WGDV                        +D+  A  ++  L+I E +K +  L+E EDS+IK VT+GDTPYTSA+ FEDLNLSPEL+KGLYVEMKF+KPSKIQAISLPMI+TPP+++LIAQA NGSGKTTCFVLGMLSRVDP L+ PQALCICPTRELA QN+EVL+KMGK TGIT+E AVP DST   P + R  PV+A VVIGTPGT+KKWM+
Sbjct:   31 PTTE-KKKWGDV---------------------EDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKKWMA 230          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH38_ORYSJ (DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica GN=Os03g0158200 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.430e-59
Identity = 118/233 (50.64%), Postives = 149/233 (63.95%), Query Frame = 2
Query:  113 PSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVN-----------KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778
            P T  K+SW DV                   +++           +E L++   ++               LD++++S I+ VT+G T Y SA  FEDL L+PELLKGL+ EM F +PSKIQA++LPMILTPPY++LIAQA NGSGKTTCFVLGMLSRVDPN K  QA+CICPTRELA QN  VL +MGK TGIT  CA+P    +YVPI+K P +T QVVIGT GT+ KW++
Sbjct:    7 PPTPEKKSWADVEEEEEAKAKAAAAAEAASSSSSNEPAVDAQAKQIEALSLSVPEEHGGSGGGGDDQGPPLLDDSDESQIQAVTSGGTVYESAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWIN 239          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 2
Query:  338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 757
            ++P  S  +FE+L LSPELLKGLY  MKF KPSKIQ  +LP++L+ P RN+I Q+++G+GKT  F L MLSRVDP +K PQ LC+ PTRELA Q LEV+  MGK T IT++  VP    N +P  +   V AQV++GTPG
Sbjct:  143 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVP----NAIP--RGSSVNAQVLVGTPG 275          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.924e-34
Identity = 83/189 (43.92%), Postives = 118/189 (62.43%), Query Frame = 2
Query:  218 SEDK-STAELDVEGLTIDESKK---VNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            SED  +T+E  VE     E+K     NK ++   +  +         ++P  S  +FE+L LS ELLKGLY  MKFQKPSKIQ  +LP+++  P  N+IAQ+++G+GKT  F L ML+RVDPN+ + QA+C+ P RELA Q LEV+++MGK T  +S+  VP          +  P+TA +V+GTPGT+
Sbjct:   25 SEDNDTTSETKVEKEDAKETKAEEPANKVINSEYEVKVNLADLQADANSPLYSVKSFEELGLSEELLKGLYA-MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS------FERNKPITANIVVGTPGTV 206          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.819e-34
Identity = 82/181 (45.30%), Postives = 117/181 (64.64%), Query Frame = 2
Query:  221 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            E+K T + D   ++ +   KV     +A+ +S         P  SA +F++L L+PELLKG+Y  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L ML+RV+P   +PQA+C+ P+RELA Q LEV+++MGK T ITS+  VP          K   + AQV++GTPGT+
Sbjct:   55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTV 219          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.819e-34
Identity = 82/181 (45.30%), Postives = 117/181 (64.64%), Query Frame = 2
Query:  221 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            E+K T + D   ++ +   KV     +A+ +S         P  SA +F++L L+PELLKG+Y  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L ML+RV+P   +PQA+C+ P+RELA Q LEV+++MGK T ITS+  VP          K   + AQV++GTPGT+
Sbjct:   55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTV 219          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_CANGA (ATP-dependent RNA helicase DBP5 OS=Candida glabrata GN=DBP5 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.988e-34
Identity = 89/214 (41.59%), Postives = 127/214 (59.35%), Query Frame = 2
Query:  209 ANTSEDKSTAEL------------DVEGLTIDE-SKKVNK--FLDEAEDSSIKTVTTG--------------DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +N++E K+T E+            DVE    +E + +VNK    DE E+     + +               ++P  S  +F++L LSPELLKG+Y  MKFQKPSKIQ  +LP++L+ P RN+IAQ+++G+GKT  F L MLSRVD     PQA+C+ P+RELA Q LEV+++MGK+T IT++  VP          K   + A VV+GTPGT+
Sbjct:   35 SNSAETKTTEEVKELKNPFTQKKEDVENDAAEEKTNEVNKDDAKDERENKDTNLIKSEYEVKVNLADLQADPNSPLYSVKSFDELGLSPELLKGIYA-MKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSLTMLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDS------FEKNTKINANVVVGTPGTL 241          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.451e-33
Identity = 78/185 (42.16%), Postives = 117/185 (63.24%), Query Frame = 2
Query:  218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKT---VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            ++DKS +E        D+SK+    ++   +  +K        ++P  S  +FE+L L PELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD ++KAPQ +C+ PTRELA Q LEV+  MGK++ IT +  VP        + +   ++AQV++GTPG +
Sbjct:   72 NKDKSQSEAK------DDSKRETNLIENRYEVEVKLDDIQADPNSPLYSVKSFEELGLKPELLKGLYA-MKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESIKAPQCICLAPTRELARQTLEVVETMGKYSNITYQLVVPDS------VPRGQAISAQVLVGTPGIV 243          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.097e-32
Identity = 78/185 (42.16%), Postives = 110/185 (59.46%), Query Frame = 2
Query:  218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763
            +ED    EL   G   +E  K N  +    +  +K        ++P  S  +FE+L L+PELLKGLY  MKF KPSKIQ  +LP++++ P RN+I Q+++G+GKT  F L MLSRVDP + + Q LC+ PTRELA Q LEV+  MGK T IT++  VP        + +     A +++GTPG +
Sbjct:   61 AEDAKPEELKEVGKEENEEPKTN-LIQSTYEVKVKLADIQADPNSPLFSVKSFEELGLTPELLKGLYA-MKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPD------ALPRGSSTNAHIIVGTPGIV 237          
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.963e-32
Identity = 75/192 (39.06%), Postives = 115/192 (59.90%), Query Frame = 2
Query:  209 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM 775
            A + +DK+T  +  +  T       +  +    +  +K        ++P  S  +FE+L L PELLKG+Y  MKFQKPSKIQ  +LP++L+ P RN+I Q+++G+GKT  F L MLSRVD ++  PQA+C+ P+RELA Q ++V+ +MGK+T + +   +         + K   + AQ+VIGTPGT+   M
Sbjct:   61 AKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS------VPKGAKIDAQIVIGTPGTVMDLM 245          
The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
RH38_ARATH6.664e-7163.23DEAD-box ATP-dependent RNA helicase 38 OS=Arabidop... [more]
RH38_ORYSJ3.430e-5950.64DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sa... [more]
DBP5_CANAL2.239e-3455.71ATP-dependent RNA helicase DBP5 OS=Candida albican... [more]
DBP5_KLULA2.924e-3443.92ATP-dependent RNA helicase DBP5 OS=Kluyveromyces l... [more]
DBP5_YEAST3.819e-3445.30ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_YEAS73.819e-3445.30ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_CANGA4.988e-3441.59ATP-dependent RNA helicase DBP5 OS=Candida glabrat... [more]
DBP5_LODEL1.451e-3342.16ATP-dependent RNA helicase DBP5 OS=Lodderomyces el... [more]
DBP5_PICST6.097e-3242.16ATP-dependent RNA helicase DBP5 OS=Pichia stipitis... [more]
DBP5_SCHPO7.963e-3239.06ATP-dependent RNA helicase dbp5 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bp
AAAGAACAATCTCGCTGACAGTGAAAATCCTTCGACCAAATCCCATCACA
CAACGCCAAATATGGCCGACGCAACCGAAAACCCAGCAGCTCCTGCCACG
TTAGAGCCGTTGCCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGC
GGAGGAGGAGGAGGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGC
AGCAAACCGCTAACACATCTGAGGATAAATCAACGGCGGAACTGGACGTC
GAGGGTTTGACTATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGA
AGCTGAAGACTCTAGCATCAAAACCGTTACGACTGGTGATACACCTTATA
CCTCCGCAACTACATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAG
GGATTATACGTGGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCAT
CAGTTTGCCTATGATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGG
CACGTAATGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGC
CGTGTTGATCCAAACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTAC
CAGAGAATTGGCAATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGC
ACACAGGGATAACTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTAT
GTGCCAATATCAAAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCAC
TCCTGGTACCATTAAGAAATGGATGTCAGCA
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