CB290556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH38_ARATH (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2) HSP 1 Score: 267.314 bits (682), Expect = 6.664e-71 Identity = 141/223 (63.23%), Postives = 168/223 (75.34%), Query Frame = 2 Query: 113 PSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMS 778 P+TE K+ WGDV +D+ A ++ L+I E +K + L+E EDS+IK VT+GDTPYTSA+ FEDLNLSPEL+KGLYVEMKF+KPSKIQAISLPMI+TPP+++LIAQA NGSGKTTCFVLGMLSRVDP L+ PQALCICPTRELA QN+EVL+KMGK TGIT+E AVP DST P + R PV+A VVIGTPGT+KKWM+ Sbjct: 31 PTTE-KKKWGDV---------------------EDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKKWMA 230
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: RH38_ORYSJ (DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica GN=Os03g0158200 PE=3 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.430e-59 Identity = 118/233 (50.64%), Postives = 149/233 (63.95%), Query Frame = 2 Query: 113 PSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVN-----------KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 778 P T K+SW DV +++ +E L++ ++ LD++++S I+ VT+G T Y SA FEDL L+PELLKGL+ EM F +PSKIQA++LPMILTPPY++LIAQA NGSGKTTCFVLGMLSRVDPN K QA+CICPTRELA QN VL +MGK TGIT CA+P +YVPI+K P +T QVVIGT GT+ KW++ Sbjct: 7 PPTPEKKSWADVEEEEEAKAKAAAAAEAASSSSSNEPAVDAQAKQIEALSLSVPEEHGGSGGGGDDQGPPLLDDSDESQIQAVTSGGTVYESAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWIN 239
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34 Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 2 Query: 338 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 757 ++P S +FE+L LSPELLKGLY MKF KPSKIQ +LP++L+ P RN+I Q+++G+GKT F L MLSRVDP +K PQ LC+ PTRELA Q LEV+ MGK T IT++ VP N +P + V AQV++GTPG Sbjct: 143 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVP----NAIP--RGSSVNAQVLVGTPG 275
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.924e-34 Identity = 83/189 (43.92%), Postives = 118/189 (62.43%), Query Frame = 2 Query: 218 SEDK-STAELDVEGLTIDESKK---VNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 SED +T+E VE E+K NK ++ + + ++P S +FE+L LS ELLKGLY MKFQKPSKIQ +LP+++ P N+IAQ+++G+GKT F L ML+RVDPN+ + QA+C+ P RELA Q LEV+++MGK T +S+ VP + P+TA +V+GTPGT+ Sbjct: 25 SEDNDTTSETKVEKEDAKETKAEEPANKVINSEYEVKVNLADLQADANSPLYSVKSFEELGLSEELLKGLYA-MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS------FERNKPITANIVVGTPGTV 206
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.819e-34 Identity = 82/181 (45.30%), Postives = 117/181 (64.64%), Query Frame = 2 Query: 221 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 E+K T + D ++ + KV +A+ +S P SA +F++L L+PELLKG+Y MKFQKPSKIQ +LP++L P RN+IAQ+++G+GKT F L ML+RV+P +PQA+C+ P+RELA Q LEV+++MGK T ITS+ VP K + AQV++GTPGT+ Sbjct: 55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTV 219
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.819e-34 Identity = 82/181 (45.30%), Postives = 117/181 (64.64%), Query Frame = 2 Query: 221 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 E+K T + D ++ + KV +A+ +S P SA +F++L L+PELLKG+Y MKFQKPSKIQ +LP++L P RN+IAQ+++G+GKT F L ML+RV+P +PQA+C+ P+RELA Q LEV+++MGK T ITS+ VP K + AQV++GTPGT+ Sbjct: 55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTV 219
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_CANGA (ATP-dependent RNA helicase DBP5 OS=Candida glabrata GN=DBP5 PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.988e-34 Identity = 89/214 (41.59%), Postives = 127/214 (59.35%), Query Frame = 2 Query: 209 ANTSEDKSTAEL------------DVEGLTIDE-SKKVNK--FLDEAEDSSIKTVTTG--------------DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +N++E K+T E+ DVE +E + +VNK DE E+ + + ++P S +F++L LSPELLKG+Y MKFQKPSKIQ +LP++L+ P RN+IAQ+++G+GKT F L MLSRVD PQA+C+ P+RELA Q LEV+++MGK+T IT++ VP K + A VV+GTPGT+ Sbjct: 35 SNSAETKTTEEVKELKNPFTQKKEDVENDAAEEKTNEVNKDDAKDERENKDTNLIKSEYEVKVNLADLQADPNSPLYSVKSFDELGLSPELLKGIYA-MKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSLTMLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDS------FEKNTKINANVVVGTPGTL 241
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.451e-33 Identity = 78/185 (42.16%), Postives = 117/185 (63.24%), Query Frame = 2 Query: 218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKT---VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 ++DKS +E D+SK+ ++ + +K ++P S +FE+L L PELLKGLY MKF KPSKIQ +LP++++ P +N+I Q+++G+GKT F L MLSRVD ++KAPQ +C+ PTRELA Q LEV+ MGK++ IT + VP + + ++AQV++GTPG + Sbjct: 72 NKDKSQSEAK------DDSKRETNLIENRYEVEVKLDDIQADPNSPLYSVKSFEELGLKPELLKGLYA-MKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESIKAPQCICLAPTRELARQTLEVVETMGKYSNITYQLVVPDS------VPRGQAISAQVLVGTPGIV 243
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 6.097e-32 Identity = 78/185 (42.16%), Postives = 110/185 (59.46%), Query Frame = 2 Query: 218 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 763 +ED EL G +E K N + + +K ++P S +FE+L L+PELLKGLY MKF KPSKIQ +LP++++ P RN+I Q+++G+GKT F L MLSRVDP + + Q LC+ PTRELA Q LEV+ MGK T IT++ VP + + A +++GTPG + Sbjct: 61 AEDAKPEELKEVGKEENEEPKTN-LIQSTYEVKVKLADIQADPNSPLFSVKSFEELGLTPELLKGLYA-MKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPD------ALPRGSSTNAHIIVGTPGIV 237
BLAST of CB290556 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.963e-32 Identity = 75/192 (39.06%), Postives = 115/192 (59.90%), Query Frame = 2 Query: 209 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM 775 A + +DK+T + + T + + + +K ++P S +FE+L L PELLKG+Y MKFQKPSKIQ +LP++L+ P RN+I Q+++G+GKT F L MLSRVD ++ PQA+C+ P+RELA Q ++V+ +MGK+T + + + + K + AQ+VIGTPGT+ M Sbjct: 61 AKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS------VPKGAKIDAQIVIGTPGTVMDLM 245 The following BLAST results are available for this feature:
BLAST of CB290556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 259
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290556 ID=CB290556; Name=CB290556; organism=Citrus sinensis; type=EST; length=781bpback to top |