CB290567

Overview
NameCB290567
Unique NameCB290567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: WDFY3_MOUSE (WD repeat and FYVE domain-containing protein 3 OS=Mus musculus GN=Wdfy3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = -2
Query:  451 GEQKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 696
            G+ +     W    +PG    DHWV DE    C+ C   FS   R+HHCRNCG +FC KC+  +  +     + PVRVC  C
Sbjct: 3410 GDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNC 3491          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: WDFY3_HUMAN (WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = -2
Query:  451 GEQKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 696
            G+ +     W    +PG    DHWV DE    C+ C   FS   R+HHCRNCG +FC KC+  +  +     + PVRVC  C
Sbjct: 3428 GDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNC 3509          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: ADCA_DICDI (Arrestin domain-containing protein A OS=Dictyostelium discoideum GN=adcA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.469e-13
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = -2
Query:  406 MKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ---RLSNAKEMA 657
            + P    +  W  DE  + C  C   FS F RKHHCR+C  IFCDKCT  +  +T  A  +PVRVC+ C    TQ   +  +AK MA
Sbjct:  455 LPPDVSYRHPWEGDEHATACRKCNKGFSLFARKHHCRHCMKIFCDKCTSTKTTITKLAYPKPVRVCEECYPIATQGGNKYQSAKLMA 541          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_XENTR (Lateral signaling target protein 2 homolog OS=Xenopus tropicalis GN=zfyve28 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 36/79 (45.57%), Postives = 43/79 (54.43%), Query Frame = -2
Query:  409 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC-MAEVTQRLSNAKEM 642
            E+   WVPDE  S CTAC   F+   RKHHCR+CG IFC +C+     L      +PVRVC  C M  VT   S+   M
Sbjct:  873 EDPPDWVPDEVCSLCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQMKPVRVCTHCYMFHVTPFYSDRAGM 951          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_HUMAN (Lateral signaling target protein 2 homolog OS=Homo sapiens GN=ZFYVE28 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = -2
Query:  451 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 642
            E+   WVPDEA   CTAC   F+   RKHHCR+CG IFC +C+     L      +PVRVC  C
Sbjct:  809 EDPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHC 872          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: RUFY1_HUMAN (RUN and FYVE domain-containing protein 1 OS=Homo sapiens GN=RUFY1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.381e-13
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = -2
Query:  421 LKEMGGGRSRSSDSLKTAEQTGEQKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSN 759
            L+EMG   S+S   ++  ++  +  KG A               W+ D+  + C  C  +FS   RKHHCRNCG IFC+ C+   +AL   +  +PVRVCD C   + QR S+
Sbjct:  610 LQEMGLHLSQSKLKMEDIKEVNQALKGHA---------------WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELAL--PSYPKPVRVCDSCHTLLLQRCSS 705          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_MOUSE (Lateral signaling target protein 2 homolog OS=Mus musculus GN=Zfyve28 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.381e-13
Identity = 35/79 (44.30%), Postives = 43/79 (54.43%), Query Frame = -2
Query:  409 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC-MAEVTQRLSNAKEM 642
            E+   WVPDEA   CT+C   F+   RKHHCR+CG IFC +C+     L      +PVRVC  C M  VT   S+   M
Sbjct:  827 EDPPEWVPDEACGFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKTGM 905          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: RUFY1_MOUSE (RUN and FYVE domain-containing protein 1 OS=Mus musculus GN=Rufy1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.225e-12
Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = -2
Query:  421 LKEMGGGRSRSSDSLKTAEQTGEQKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSN 759
            L+EMG   S+S   ++  ++  +  KG                 W+ D+  + C  C  DFS   RKHHCRNCG IFC+ C+   +AL   +  +PVRVCD C   + QR S+
Sbjct:  614 LQEMGLHLSQSKLKMEDIKEVNKALKGHT---------------WLKDDEATHCKQCEKDFSISRRKHHCRNCGHIFCNTCSSNELAL--PSYPKPVRVCDSCHTLLLQRCSS 709          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: LST2_DANRE (Lateral signaling target protein 2 homolog OS=Danio rerio GN=zfyve28 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.225e-12
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = -2
Query:  451 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 642
            E+   WVPDEA + C AC   F+   RKHHCR+CG IFC +C+     L      +PVRVC  C
Sbjct:  891 EDPPEWVPDEACNSCIACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQMKPVRVCTHC 954          
BLAST of CB290567 vs. ExPASy Swiss-Prot
Match: RUFY2_PONAB (RUN and FYVE domain-containing protein 2 OS=Pongo abelii GN=RUFY2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = -2
Query:  421 LKEMGGGRSRSSDSLKTAEQTGEQKKGFADWMNLMKPGNEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSN 759
            L+E+G   S S   ++  ++  +  +G                 W+ D+  + C  C  +FS   RKHHCRNCG+IFC+ C+   + L   ++ +PVRVCD C A + QR S+
Sbjct:  508 LQELGNKLSESKLKIEDIKEANKALQGLV---------------WLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPL--PSSPKPVRVCDSCHALLIQRCSS 603          
The following BLAST results are available for this feature:
BLAST of CB290567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
WDFY3_MOUSE6.497e-1439.02WD repeat and FYVE domain-containing protein 3 OS=... [more]
WDFY3_HUMAN6.497e-1439.02WD repeat and FYVE domain-containing protein 3 OS=... [more]
ADCA_DICDI2.469e-1342.53Arrestin domain-containing protein A OS=Dictyostel... [more]
LST2_XENTR5.500e-1345.57Lateral signaling target protein 2 homolog OS=Xeno... [more]
LST2_HUMAN5.500e-1348.44Lateral signaling target protein 2 homolog OS=Homo... [more]
RUFY1_HUMAN9.381e-1335.40RUN and FYVE domain-containing protein 1 OS=Homo s... [more]
LST2_MOUSE9.381e-1344.30Lateral signaling target protein 2 homolog OS=Mus ... [more]
RUFY1_MOUSE1.225e-1235.40RUN and FYVE domain-containing protein 1 OS=Mus mu... [more]
LST2_DANRE1.225e-1246.88Lateral signaling target protein 2 homolog OS=Dani... [more]
RUFY2_PONAB2.090e-1232.74RUN and FYVE domain-containing protein 2 OS=Pongo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cc07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290567 ID=CB290567; Name=CB290567; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTTTTTTAAAGGTAATCATAAAGTCAATAGAATTCACTGA
ACAGACCAAGAATAGATACTATACAAACTAATCCAAATTATTAATAATCA
CAAGCTGAACAAGTAAAATAAGTTCAACCAGAATTACTATAGATAAGGCG
TTCGGTAGCCTTCACCAGTTGTAAAAATCAATGAGCACTCACAAGGAAAG
GATGCTGGCAAACTCCACACTCAATAGTCTCAGAACCTGAGCTCGGTACT
TGGACCTGCAAATGGACAGTGCAAGTGGGACAAGCAACTTCCCTCATCCG
TCTACCAGATCCATCAGACTTGGATCCTGATGATGACTTGCGATTTTTCT
CCATTTCCTGAAGCTTCCTCGCAAGATCCTCATGACTCTGTAATGCAGGT
TTATTAGCCATTTCTTTAGCATTACTTAGCCTCTGAGTCACTTCCGCCAT
GCATCGGTCACAAACTCGAACCGGCTGAGCGTTCGCATCAGCAGTAAGAG
CAATCCTTCCGTGGGTACACTTGTCACAGAAAATATCACCACAGTTCCTG
CAGTGATGCTTGCGCACAAAAGCCGAAAAATCTGTCCCGCATGCTGTACA
CTTTGAAACAGCTTCATCAGGGACCCAATGATCTTTCTCCTCGTTGCCAG
GTTTCATCAAGTTCATCCAATCAGCAAAGCCTTTCTTCTGCTCCCCAGTC
TGTTCGGCTGTCTTCAAGGAATCAGAAGACCTGCTCCTTCCACCACCCAT
CTCCTTCAACTGTACAGTAGCAGCTGTCACTATGTCCAATAGGGTGGTGG
CAGTGTAACTATTTGATTGTAATCTAATACGTCTTGGTTCAATG
back to top