CB290576

Overview
NameCB290576
Unique NameCB290576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7704 contig Csv1_Contig7704:69..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290576 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.374e-18
Identity = 72/255 (28.24%), Postives = 103/255 (40.39%), Query Frame = 1
Query:   82 TLDPDPQFGVSSKDITISQNPAISTRLYLPKLTQPHQKLAIL--------------VYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFE-RFFIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSESDGSDNYDQKKCLEYLIWEFVYPAAPGGIDNPMINPVGSGNPSL 801
            T + +P  GV S D+ I +   + +R+Y P      Q  +IL              ++FHG +F   SA S +       LV   + + VS+ YR APE   P AY+D W A  WV                        N   WL +  D +   F+ GDSSGGNI HN+A++AG+          +G+ +LG  L +P F G+    SE      Y          W+   P      ++P  NP      SL
Sbjct:   54 TANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV------------------------NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE----------SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDR-EHPACNPFSPRGKSL 273          
BLAST of CB290576 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 74/251 (29.48%), Postives = 106/251 (42.23%), Query Frame = 1
Query:   97 PQFGVSSKDITISQNPAISTRLYLP------------KLTQP---HQKLAILVYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFERF-FIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSESDGSDNYDQKKCLEYLIWEFVYPAAPGGIDNPMINPVGSGNPSL 801
            P  GV S D  +     + TR+Y P            +LT+P    + + +L++FHG +F   SA S +   +   LV+   V+ VS++YR +PE+  P AY+D W A  WV S                          WL +  D   + ++ GDSSGGNI HN+A++A ++          GV++LG  L HP F G     SE      Y          W    P      D+P  NP G    SL
Sbjct:   59 PLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS------------------------RVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE----------GVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDR-DHPACNPFGPRGQSL 273          
BLAST of CB290576 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.624e-17
Identity = 70/251 (27.89%), Postives = 105/251 (41.83%), Query Frame = 1
Query:   97 PQFGVSSKDITISQNPAISTRLY-----------LPKLTQP----------HQKLAILVYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFE-RFFIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSESDGSDNYDQKKCLEYLIWEFVYPAAPGGIDNPMINPVG 783
            P  GVSS D  I Q+  +  R+Y              +T+P           +   ++++FHG +F   SA S +        V  S+ + VS+ YR APE+  P AY+D W A +WV S                        +P++ + GD + R F+ GDSSGGNI H++A++A D+          GV++ G  L +  F G+    SE      Y          W+  Y       D+P  NP G
Sbjct:   59 PLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS------------------------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE----------GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWK-AYLPEDADRDHPACNPFG 274          
BLAST of CB290576 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 71/249 (28.51%), Postives = 104/249 (41.77%), Query Frame = 1
Query:   94 DPQFGVSSKDITISQNPAISTRLYLPK----------LTQP--HQKLAILVYFHGSAFCMESAFSFLQHRYLNTLVSQSQVLAVSIEYRLAPEYLLPAAYEDCWAAFQWVASHRNRNSINHHDPDHQNHSNIINNKEPWLLNHGDFE-RFFIGGDSSGGNIVHNIAMKAGDDDQESLLKEGTGVRILGAFLGHPYFWGSVPVGSESDGSDNYDQKKCLEYLIWEFVYPAAPGGIDNPMINPVGSGNPSL 801
            +P  GV S D+ I +   + +R+Y P           L  P   + + ++V+FHG +F   SA S +       LV     + VS+ YR APE   P AY+D WA  +WV                        N   WL +  D + R F+ GDSSGGNIVHN+A++A +          + + +LG  L +P F G+    SE      Y          W    P      ++P  +P G  + SL
Sbjct:   58 NPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV------------------------NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE----------SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDR-EHPACSPFGPRSKSL 271          
The following BLAST results are available for this feature:
BLAST of CB290576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L1_ARATH2.374e-1828.24Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH5.288e-1829.48Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ2.624e-1727.89Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH7.635e-1728.51Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290576 ID=CB290576; Name=CB290576; organism=Citrus sinensis; type=EST; length=804bp
GCCAAAGAGCTCCTCCCACTGATCAGAGTCTTCAAAGATGGGTCAGTTGA
GCGGCTCATGGATTCAGCCTACGTGCCTCCAACGCTTGACCCGGATCCTC
AATTCGGGGTCTCATCAAAAGACATAACCATCTCTCAAAACCCCGCCATA
TCCACTCGCCTCTACCTCCCAAAACTCACCCAGCCCCATCAAAAACTCGC
CATTTTGGTCTACTTCCACGGCAGCGCCTTCTGCATGGAGTCTGCTTTCT
CATTTCTTCAGCACAGATACCTCAACACCTTGGTCTCTCAGTCTCAAGTA
CTCGCAGTCTCCATTGAATACAGGCTCGCCCCAGAATACCTTCTTCCCGC
AGCATATGAAGACTGCTGGGCTGCTTTTCAATGGGTCGCTTCTCATCGTA
ACCGTAACAGTATCAATCATCATGATCCTGATCATCAAAACCACTCCAAT
ATTATTAACAACAAGGAGCCCTGGTTATTAAACCACGGAGATTTTGAGAG
ATTCTTTATTGGTGGTGACAGCTCCGGAGGCAATATAGTTCATAACATAG
CTATGAAAGCGGGTGATGATGATCAAGAGTCTTTATTGAAGGAGGGTACT
GGTGTTCGGATTTTAGGAGCATTTCTAGGGCATCCTTACTTCTGGGGCTC
CGTTCCAGTCGGTTCAGAATCAGATGGTAGTGATAATTATGATCAGAAGA
AGTGTTTGGAATATTTGATTTGGGAATTTGTCTATCCAGCGGCGCCTGGT
GGTATTGATAATCCGATGATCAATCCTGTTGGTTCAGGTAACCCGAGTTT
GGCT
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