CB290579

Overview
NameCB290579
Unique NameCB290579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:480..1414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 405.601 bits (1041), Expect = 5.282e-114
Identity = 189/218 (86.70%), Postives = 206/218 (94.50%), Query Frame = -3
Query:  263 GRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAA 916
            G   PVK+QGSCGSCWSFSTTGALEGA+FLATGKLVSLSEQQLVDCDHECDPEE GSCDSGCNGGLMNSAFEYTLK GGLMRE+DYPYTGTD G +CK D+SKI ASV+NFSVVS++EDQIAANL+KNGPLAVAINA YMQTYIGGVSCPYICSRRL+HGVLLVGYGSAG++  RLKEKPYWIIKNSWGESWGENG+YKIC+GRN+CGVDS+VST+AA
Sbjct:  142 GAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLKTGGLMREKDYPYTGTDGG-SCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA 358          

HSP 2 Score: 27.7202 bits (60), Expect = 5.282e-114
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = -1
Query:  895 FDWRERGAVGPLK 933
            FDWR+RGAV P+K
Sbjct:  136 FDWRDRGAVTPVK 148          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 3.401e-113
Identity = 189/220 (85.91%), Postives = 203/220 (92.27%), Query Frame = -3
Query:  257 GRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAAV 916
            G   PVK+QGSCGSCWSFS TGALEGANFLATGKLVSLSEQQLVDCDHECDPEE  SCDSGCNGGLMNSAFEYTLK GGLM+EEDYPYTG D G  CK DKSKI ASV+NFSV+S+DE+QIAANLVKNGPLAVAINA YMQTYIGGVSCPYIC+RRL+HGVLLVGYG+AGYAP R KEKPYWIIKNSWGE+WGENG+YKIC+GRN+CGVDSMVST+AA V
Sbjct:  145 GAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTGGLMKEEDYPYTGKD-GKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATV 363          

HSP 2 Score: 25.7942 bits (55), Expect = 3.401e-113
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -1
Query:  895 FDWRERGAVGPLK 933
            FDWR+ GAV P+K
Sbjct:  139 FDWRDHGAVTPVK 151          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 1.309e-106
Identity = 177/221 (80.09%), Postives = 202/221 (91.40%), Query Frame = -3
Query:  260 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAA 919
            +G   PVKDQGSCGSCW+FSTTGALEGA++LATGKLVSLSEQQLVDCDH CDPE+ GSCDSGCNGGLMN+AFEY L++GG+++E+DY YTG D   +CKFDKSK+ ASV+NFSVV+LDEDQIAANLVKNGPLAVAINA +MQTY+ GVSCPY+C++ RLDHGVLLVG+G   YAPIRLKEKPYWIIKNSWG++WGE GYYKICRGRNVCGVDSMVST+AAA
Sbjct:  141 KGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAYTGRD--GSCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAA 359          

HSP 2 Score: 27.7202 bits (60), Expect = 1.309e-106
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = -1
Query:  895 FDWRERGAVGPLK 933
            FDWRE+GAV P+K
Sbjct:  136 FDWREKGAVTPVK 148          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.582e-101
Identity = 171/221 (77.38%), Postives = 190/221 (85.97%), Query Frame = -3
Query:  263 GRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG---RNVCGVDSMVSTIAA 916
            G   PVK+QGSCGSCWSFS +GALEGA++LATGKL  LSEQQ VDCDHECD  EP SCDSGCNGGLM +AF Y  KAGGL  E+DYPYTG+D    CKFDKSKI ASV NFSVVS+DE QI+ANL+K+GPLA+ INA YMQTYIGGVSCPYIC R LDHGVLLVGYG++G+APIRLK+KPYWIIKNSWGE+WGENGYYKICRG   RN CGVDSMVST++A
Sbjct:  147 GAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPYTGSDG--KCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSA 365          

HSP 2 Score: 28.8758 bits (63), Expect = 1.582e-101
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = -1
Query:  895 FDWRERGAVGPLK 933
            FDWR+ GAVGP+K
Sbjct:  141 FDWRDHGAVGPVK 153          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 8.519e-61
Identity = 111/216 (51.39%), Postives = 142/216 (65.74%), Query Frame = -3
Query:  272 GRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC-DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 916
            G   PVK+QG CGSCWSFSTTG +EG +F++  KLVSLSEQ LVDCDHEC + E   +CD GCNGGL  +A+ Y +K GG+  E  YPYT  + G  C F+ + I A ++NF+++  +E  +A  +V  GPLA+A +AV  Q YIGGV         LDHG+L+VGY +     I  K  PYWI+KNSWG  WGE GY  + RG+N CGV + VST
Sbjct:  128 GAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYT-AETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVST 340          

HSP 2 Score: 26.5646 bits (57), Expect = 8.519e-61
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = -1
Query:  895 FDWRERGAVGPLK 933
            FDWR RGAV P+K
Sbjct:  122 FDWRTRGAVTPVK 134          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.765e-48
Identity = 97/219 (44.29%), Postives = 137/219 (62.56%), Query Frame = -3
Query:  272 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPY--ICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 919
            +G    VK+QG CGSCW+FSTTG +E   F  TGKL+SLSEQQLVDCD           D GCNGGL ++A+E  +K GGLM E++YPY    +   C      +A  + +   ++ DE ++AA L  N  ++V +NA+ +Q Y  G+S P+   CS+  LDH VLLVGYG      +  K +P+WI+KNSWG  WGENGY+++ RG   CG++++ ++
Sbjct:  114 KGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGLPSNAYESIIKMGGLMLEDNYPYDA--KNEKCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYG------VSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATS 315          

HSP 2 Score: 24.6386 bits (52), Expect = 8.765e-48
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -1
Query:  895 FDWRERGAVGPLK 933
            FDWRE+GAV  +K
Sbjct:  109 FDWREKGAVTEVK 121          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.044e-47
Identity = 84/90 (93.33%), Postives = 89/90 (98.89%), Query Frame = -3
Query:  263 GPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAA 532
            GPLAVAINA YMQTYIGGVSCPYICSRRL+HGVLLVGYGSAGYAPIRLKEKPYW+IKNSWGE+WGENGYYKICRGRN+CGVDSMVST+AA
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAA 90          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 3.044e-47
Identity = 101/218 (46.33%), Postives = 137/218 (62.84%), Query Frame = -3
Query:  260 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPY--ICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAA 901
            VK+QGSCGSCW+FS TG +EG   + TG+L   SEQ+L+DCD         + DS CNGGLM++A++     GGL  E +YPY    + + C F+++     VA F  +   +E  +   L+ NGP+++ INA  MQ Y GGVS P+  +CS++ LDHGVL+VGYG + Y P   K  PYWI+KNSWG  WGE GYY++ RG N CGV  M ++   A
Sbjct:  409 VKNQGSCGSCWAFSVTGNIEGLYAVKTGELKEFSEQELLDCD---------TTDSACNGGLMDNAYKAIKDIGGLEYEAEYPYKA--KKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVLA 614          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.017e-44
Identity = 99/219 (45.21%), Postives = 127/219 (57.99%), Query Frame = -3
Query:  272 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPY--ICSRRL-DHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 919
            +G    VKDQG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD           D  C GGL ++A+      GGL  E+DY Y G     +C F   K    + +   +S +E ++AA L K GP++VAINA  MQ Y  G+S P   +CS  L DH VLLVGYG+         + P+W IKNSWG  WGE GYY + RG   CGV++M S+
Sbjct:  280 KGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---------KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQG--HMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNR-------SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 480          
BLAST of CB290579 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 7.135e-44
Identity = 97/219 (44.29%), Postives = 126/219 (57.53%), Query Frame = -3
Query:  275 EGRCRPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSC-PYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 919
            +G   PVK+QG CGSCW+FS +G LEG  FL TGKL+SLSEQ LVDC H          + GCNGGLM+ AF+Y  + GGL  EE YPY   D   +CK+      A+   F  +   E  +   +   GP++VA++A +  +Q Y  G+   P   S+ LDHGVLLVGY   GY      +  YW++KNSWG  WG  GY KI + R N CG+ +  S
Sbjct:  123 KGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSH-------AQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKD--GSCKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGY---GYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAAS 329          

HSP 2 Score: 23.8682 bits (50), Expect = 7.135e-44
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  895 DWRERGAVGPLK 930
            DWRE+G V P+K
Sbjct:  119 DWREKGCVTPVK 130          
The following BLAST results are available for this feature:
BLAST of CB290579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
A494_ARATH5.282e-11486.70Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
RD19A_ARATH3.401e-11385.91Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA1.309e-10680.09Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP1_MAIZE1.582e-10177.38Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI8.519e-6151.39Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATL_SCHMA8.765e-4844.29Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
PAPA5_CARPA3.044e-4793.33Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CPR1_DROME3.044e-4746.33Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATF_HUMAN7.017e-4445.21Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATL1_MOUSE7.135e-4444.29Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290579 ID=CB290579; Name=CB290579; organism=Citrus sinensis; type=EST; length=933bp
TTTTTTTTTTTTTTTTTCATGTCCTTGATCTGCCAAATTTATATAACGTC
AGATAACAGTCTTAATCTTACAACAAAGGAGTTCCACTTAATGACATAAT
TGAGACATTTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATG
CATTGAGGAAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAAC
ATCCAATGGACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCA
GTCACGAACAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGA
CGTTGCGACCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCA
CCCCATGAATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGG
AGCATAGCCAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATC
GCCTCGAGCATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATG
TACACGGCATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGC
AGCAATTTGATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGG
CAGCAATCTTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCG
GTGTAAGGATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTA
CTCAAAAGCACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAAC
CTGGTTCCTCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCA
CTGAGGCTCACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGC
CCCTGTTGTACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAA
CGGGCCTACAGCGCCCCTCTCTCTCCAATCAAA
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