CB290615

Overview
NameCB290615
Unique NameCB290615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.164e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3
Query:  126 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536
            ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.827e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3
Query:  126 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.827e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3
Query:  126 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  129 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536
            +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L           T    P    E+   LA     F CG++ GAL  LG    V+A +++LPAC F V I+
Sbjct:   37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLV----------TMGSGPQYLEEAPKFLA-----FTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQ 157          
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.244e-22
Identity = 54/136 (39.71%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  129 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F KQ+D+L+TNH+GT+VLQDN F  L R+               A+       A   + F CG++RG LS LG+   V+A ++ LPAC F V I+
Sbjct:   37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRM---------------ASGLQYLEEAPKFLAFTCGLLRGTLSTLGVKSLVTASVAALPACKFQVVIQ 157          
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.077e-21
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   33 VSESCVDSLLTEIVSTYNNRFYANKPELAARR--------IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVR 530
            V+ + +D LL E+V T        K + ++ +        +E+IG+QVG +++ER  + R R ++  + ++F+C++ W  +F+K +DNLKTN RG FVL D  F W ++++     E              A + T + YFP G IRG +   G    V A   NLP C F V+
Sbjct:    3 VNVASLDFLLIELVHTAKRLAEDRKKKSSSEKSIESDFQMLESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163          
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.406e-21
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 3
Query:  129 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 533
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F+KQ+D+L+TNH+GT+VLQDN F  L                P A+       A   + F CG++RGAL  LGI   V+A ++ LP C F V I
Sbjct:   37 LEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLL---------------PMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 156          
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.665e-14
Identity = 48/125 (38.40%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  111 ELAARRIEAIGYQVGHQLSERYTMERP-----RFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLG 470
            E    R+  IG+Q+G +LSE            +  D L  +KFIC+D W ++F KQIDNLKTNHRGTF L D  +R +   S +   +N E             +    +  P GIIRG LS+LG
Sbjct:  117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-----------LKMIEPFLEIPVGIIRGVLSSLG 230          
The following BLAST results are available for this feature:
BLAST of CB290615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPC6B_MOUSE2.164e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_HUMAN2.827e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_BOVIN2.827e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6A_MOUSE7.456e-2340.44Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_BOVIN8.244e-2239.71Trafficking protein particle complex subunit 6A OS... [more]
YA95_SCHPO1.077e-2132.18Uncharacterized protein C13G6.05c OS=Schizosacchar... [more]
TPC6A_HUMAN1.406e-2140.00Trafficking protein particle complex subunit 6A OS... [more]
TRS33_YEAST1.665e-1438.40Transport protein particle 33 kDa subunit OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290615 ID=CB290615; Name=CB290615; organism=Citrus sinensis; type=EST; length=829bp
GCACTAGGCAACAGTGAAAAATGGGGAGGGAAGTATCAGAGAGTTGCGTT
GACAGCTTGTTAACAGAAATAGTATCCACGTATAACAATCGTTTCTACGC
CAACAAGCCAGAGCTTGCAGCCCGTCGGATCGAGGCGATTGGTTATCAGG
TCGGTCACCAGCTCTCCGAACGGTATACAATGGAGAGGCCACGCTTTAGT
GATCATCTAGAGGCGATAAAGTTCATCTGCAAGGACTTTTGGTCTGAGCT
CTTCAAGAAGCAGATAGACAACTTGAAGACGAACCATAGAGGTACCTTTG
TATTGCAAGACAATCGGTTTCGATGGCTTTCACGTATCTCGACTGATCCA
TCAGTCGAAAATACTGAATCTCAAGATCCTTCTGCTGCAGCTGAAAGCAA
GGCATCCCTAGCAACCATGCACGTGTACTTCCCCTGTGGAATTATAAGGG
GAGCTCTCTCAAACTTGGGGATTCCTTGTGCGGTTTCGGCCGACATATCC
AATCTTCCTGCATGTTCATTTGTGGTCCGTATAAAGGCCTGATAAGCATT
TTGGCAGACTGTGATTAAGAATGGGGTTGAAGCATATAGCTAGTTTTGAC
AGATCTGTACTGGAAAACTATTAATGCCCAATTGTTGAAAATACCGAAAG
TACCATATGAGCCCTTGGGATGAACTCCTGTTGCTTTGTAGATTTCAGAT
TATGGATACAGATATTTTGAAATTGTGATAAGTGATTACTGAAGAGCCAT
TTTCTTGGTCCTCTCTTCACATCCATTGTAAAAGCAGACTATTCAATGGT
TTCATCCTCACCCAAAAAAAAAAAAAAAA
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