CB290615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.164e-30 Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3 Query: 126 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536 ++E++G++VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S A + A+ ++ F CG+IRG LSNLGI V+A++S++PAC F V I+ Sbjct: 35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.827e-30 Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3 Query: 126 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536 ++E +G++VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S A + A+ ++ F CG+IRG LSNLGI V+A++S++PAC F V I+ Sbjct: 35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.827e-30 Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3 Query: 126 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536 ++E +G++VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S A + A+ ++ F CG+IRG LSNLGI V+A++S++PAC F V I+ Sbjct: 35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23 Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 3 Query: 129 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536 +E +G++VG L ER +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F L T P E+ LA F CG++ GAL LG V+A +++LPAC F V I+ Sbjct: 37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLV----------TMGSGPQYLEEAPKFLA-----FTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQ 157
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.244e-22 Identity = 54/136 (39.71%), Postives = 78/136 (57.35%), Query Frame = 3 Query: 129 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 536 +E +G++VG L ER E F + L+ +KF+CKD W +F KQ+D+L+TNH+GT+VLQDN F L R+ A+ A + F CG++RG LS LG+ V+A ++ LPAC F V I+ Sbjct: 37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRM---------------ASGLQYLEEAPKFLAFTCGLLRGTLSTLGVKSLVTASVAALPACKFQVVIQ 157
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 1.077e-21 Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 3 Query: 33 VSESCVDSLLTEIVSTYNNRFYANKPELAARR--------IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVR 530 V+ + +D LL E+V T K + ++ + +E+IG+QVG +++ER + R R ++ + ++F+C++ W +F+K +DNLKTN RG FVL D F W ++++ E A + T + YFP G IRG + G V A NLP C F V+ Sbjct: 3 VNVASLDFLLIELVHTAKRLAEDRKKKSSSEKSIESDFQMLESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.406e-21 Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 3 Query: 129 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 533 +E +G++VG L ER E F + L+ +KF+CKD W +F+KQ+D+L+TNH+GT+VLQDN F L P A+ A + F CG++RGAL LGI V+A ++ LP C F V I Sbjct: 37 LEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLL---------------PMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 156
BLAST of CB290615 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.665e-14 Identity = 48/125 (38.40%), Postives = 64/125 (51.20%), Query Frame = 3 Query: 111 ELAARRIEAIGYQVGHQLSERYTMERP-----RFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLG 470 E R+ IG+Q+G +LSE + D L +KFIC+D W ++F KQIDNLKTNHRGTF L D +R + S + +N E + + P GIIRG LS+LG Sbjct: 117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-----------LKMIEPFLEIPVGIIRGVLSSLG 230 The following BLAST results are available for this feature:
BLAST of CB290615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290615 ID=CB290615; Name=CB290615; organism=Citrus sinensis; type=EST; length=829bpback to top |