CB290625

Overview
NameCB290625
Unique NameCB290625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:783..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.595e-63
Identity = 112/147 (76.19%), Postives = 126/147 (85.71%), Query Frame = -2
Query:  305 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMG---RNVCGVDSMVSFVGGVHTT 736
            GG+E EKDYPYTG+DG  CKFDKSKI A+V NF V+S DE Q+ ANL+KHGPLA+GIN+ +MQTYIGGVSCPYICG++LDHGVL+VGYG+SGFAPIR K KPYWIIKNSWGENWGENGYYKIC G   RN CGVDSMVS V  VH +
Sbjct:  224 GGLESEKDYPYTGSDG-KCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSAVHAS 369          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.650e-60
Identity = 106/145 (73.10%), Postives = 125/145 (86.21%), Query Frame = -2
Query:  302 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSFVGGVHTTS 736
            GG+ REKDYPYTGTDGGSCK D+SKI A+VSNF V+S +EDQ+ ANL+K+GPLAV IN+ +MQTYIGGVSCPYIC + L+HGVL+VGYGS+GF+  R K KPYWIIKNSWGE+WGENG+YKIC GRN+CGVDS+VS V    TTS
Sbjct:  219 GGLMREKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA--TTS 361          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.190e-60
Identity = 104/146 (71.23%), Postives = 125/146 (85.62%), Query Frame = -2
Query:  299 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSFVGGVHTTSS 736
            GG+ +E+DYPYTG DG +CK DKSKI A+VSNF VIS DE+Q+ ANLVK+GPLAV IN+ +MQTYIGGVSCPYIC + L+HGVL+VGYG++G+AP RFK KPYWIIKNSWGE WGENG+YKIC GRN+CGVDSMVS V    +T++
Sbjct:  222 GGLMKEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATVSTTA 367          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.308e-57
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = -2
Query:  308 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSFVGGVHT 736
            GGV +EKDY YTG DG SCKFDKSK+ A+VSNF V++ DEDQ+ ANLVK+GPLAV IN+ WMQTY+ GVSCPY+C K  LDHGVL+VG+G   +APIR K KPYWIIKNSWG+NWGE GYYKIC GRNVCGVDSMVS V    +
Sbjct:  219 GGVVQEKDYAYTGRDG-SCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAAQS 361          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.394e-43
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = -2
Query:  302 GPLAVGINSVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSFVGGVHTTS 586
            GPLAV IN+ +MQTYIGGVSCPYIC + L+HGVL+VGYGS+G+APIR K KPYW+IKNSWGENWGENGYYKIC GRN+CGVDSMVS V  VHTTS
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTS 95          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = -2
Query:  329 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 736
            GG++ E  YPYT   G  C F+ + IGA +SNF +I  +E  M   +V  GPLA+  ++V  Q YIGGV         LDHG+LIVGY +     I  K  PYWI+KNSWG +WGE GY  +  G+N CGV + VS
Sbjct:  206 GGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVS 339          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = -2
Query:  329 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVI-SSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPY--ICGKY-LDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 736
            GG+E E +YPY       C F+++     V+ F  +   +E  M   L+ +GP+++GIN+  MQ Y GGVS P+  +C K  LDHGVL+VGYG S + P   K  PYWI+KNSWG  WGE GYY++  G N CGV  M +
Sbjct:  472 GGLEYEAEYPYKAKKN-QCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMAT 609          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = -2
Query:  329 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 736
            GG+E E DY Y G    SC F   K    +++   +S +E ++ A L K GP++V IN+  MQ Y  G+S P   +C  +L DH VL+VGYG+    P       +W IKNSWG +WGE GYY +  G   CGV++M S
Sbjct:  349 GGLETEDDYSYQG-HMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVP-------FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMAS 479          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = -2
Query:  311 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNF-RVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSFVGGVH 736
            GG+  E DYPY GT G  CK D  K   +VS+  R I  +E+ +   L+  GP+A+ I++  + TY  G+   + C    L+H VL+VGYG+ G       G  YW +KNSWG +WGE+GY+++    N CG+++ ++    +H
Sbjct:  204 GGLMEEIDYPYQGTKG-VCKIDNKKFALSVSSCKRYIFQNEENLKKELITMGPIAMAIDAASISTYSKGII--HFCENLGLNHAVLLVGYGTEG-------GVSYWTLKNSWGSDWGEDGYFRVKRNINACGLNNQLAASATIH 337          
BLAST of CB290625 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = -2
Query:  329 GGVEREKDYPYTGTDGGSCKFDKSKIGAAVSNFRVISSDEDQMGANLVKHGPLAVGINSVWMQTYIGGVSCPY--ICGK-YLDHGVLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 736
            GG+E E DY Y G    +C F        +++   +S +E+++ A L + GP++V IN+  MQ Y  G++ P+  +C   ++DH VL+VGYG+           PYW IKNSWG +WGE GYY +  G   CGV++M S
Sbjct:  327 GGLETEDDYGYQG-HVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRS-------NIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVNTMAS 457          
The following BLAST results are available for this feature:
BLAST of CB290625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CYSP1_MAIZE1.595e-6376.19Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
A494_ARATH1.650e-6073.10Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
RD19A_ARATH8.190e-6071.23Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA1.308e-5771.53Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
PAPA5_CARPA2.394e-4380.00Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CYSP1_DICDI1.968e-2946.32Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CPR1_DROME1.320e-2545.00Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATF_HUMAN8.007e-2341.73Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATV_NPVAH8.852e-2237.50Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATF_MOUSE1.156e-2138.85Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290625 ID=CB290625; Name=CB290625; organism=Citrus sinensis; type=EST; length=737bp
TTTTATTTTTTTTTTTTTTTAAAATATAACATTATAATATTTCTACAAGC
CTGCCCAATATAAAAAGAAAATATTAATCCCATCTTCAATAACAATTCTG
TAGCATGGTTAACTATAAAATGGATAAATATTACATTCTGACATGACATA
TGCTTAAATATTACAAAAACATATAAAGTTCATGCCTCAACCCACGCATG
TAGGCATCCTTATAATTGCAAACGGCTATTTAAAAGGATATCCAATAATA
TCTTCGTATATAACCTCCACTTGCCTAGCACAACCTCCATAATGTCTAAC
TTGAGGTTGTATGGACACCACCTACAAATGAAACCATGGAGTCAACCCCA
CAAACATTGCGACCCATGCAAATCTTATAATATCCATTCTCTCCCCAGTT
CTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCCCCTTGAAACGGA
TCGGGGCGAAACCTGAAGATCCATACCCCACGATAAGCACTCCATGATCC
AAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATATATGTTTG
CATCCAAACGGAATTGATACCCACTGCCAAAGGGCCATGTTTCACCAAAT
TTGCACCCATTTGATCTTCATCAGAGGAAATAACCCTGAAATTAGATACA
GCTGCACCAATTTTGCTTTTGTCAAATTTGCAGGAACCACCGTCGGTCCC
AGTGTAAGGGTAGTCCTTCTCTCGCTCAACCCCACCA
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