CB290674

Overview
NameCB290674
Unique NameCB290674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig144 contig Csv1_Contig144:932..1513. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290674 vs. ExPASy Swiss-Prot
Match: CFA_ECOLI (Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = -2 
Query:  243 FIKEYIFPGGCLPSLGRLTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSR 530
            +I +YIFP GCLPS+ ++  A +S     +E   N G  Y  TL  W + F+    EI A  ++E+F R + YY + CA +F++R I  +Q+VFSR
Sbjct:  280 WINKYIFPNGCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 372
[Close]
BLAST of CB290674 vs. ExPASy Swiss-Prot
Match: CFA_ECOL6 (Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6 GN=cfa PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = -2 
Query:  243 FIKEYIFPGGCLPSLGRLTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSR 530
            +I +YIFP GCLPS+ ++  A +S     +E   N G  Y  TL  W + F+    EI A  ++E+F R + YY + CA +F++R I  +Q+VFSR
Sbjct:  280 WINKYIFPNGCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 372
The following BLAST results are available for this feature:
BLAST of CB290674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CFA_ECOLI5.264e-1239.58Cyclopropane-fatty-acyl-phospholipid synthase OS=E... [more]
CFA_ECOL65.264e-1239.58Cyclopropane-fatty-acyl-phospholipid synthase OS=E... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290674 ID=CB290674; Name=CB290674; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTTAGGAAATTTCATCAAATTTATTTACTATCCCTTA
AAATTTCGGCATGAAAATGTTCTATGAAAATTATCCCTTTACAACTGAAC
CAGCGAAAAAAGTACTTGAAGTCCTCTTACAACAAACGATAAAGGAGTAA
ATTGAGCCCCATTAATTAAAAGAACATAATCAATATTGATATGCTGAAGG
AAAGCCTTCGAAAGGATCCCTGAATGCATCGACTTTGCCGGGACGTGAAA
ATACTATCTGATAATCTCCGATTATCCGAGACTTGAAACTGGCTGCACAA
TAATCAAAGTAATATTCCCATGTCCGAATGAACTTTTCATTGAATCCCAG
AGCAAGAATTTCACTTTGTTTTCCCATGAAATTTTTTCTCCAGCATCTGA
GTGTTTGGTAGTAATGGATTCCTATATTTTCCAGATGCTCCACACATAAT
CCGGATGAAGAAGTCATCGCTGATGTTAATCTACCTAACGACGGCAAGCA
TCCACCAGGGAAAATATATTCCTTTATAAAACCTGGACTTAGCCTGGATT
CATCGTAACACTGATCTGGCGCTGATATGAAC
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