CB290675

Overview
NameCB290675
Unique NameCB290675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig144 contig Csv1_Contig144:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: CFA_ECOLI (Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 60/187 (32.09%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  159 GTLRNSPLKTVLRIHNPQFYWKVMTEADLGLADSYINDFSLL--LNVFQIVIANQDFDSSTSKLKKKRGWWSPMFFTASIASAKYFFRNISRKNSLTQARRNVSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            G   N      +R+ NP F+ +V+ E  LGL +SY++ +     L++F   +     ++      K          T  IA A+ F  N+  K       +    HYDL N+LFS  LD  M YSCA +K + ++LE  Q  K+ ++ EK ++  G  VLDIGCGWG LA  +         G+T+S
Sbjct:   28 GIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKD---------TLRIAGARLF--NLQSKKRAWIVGKE---HYDLGNDLFSRMLDPFMQYSCAYWK-DADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTIS 199          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: CFA_ECOL6 (Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6 GN=cfa PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 60/187 (32.09%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  159 GTLRNSPLKTVLRIHNPQFYWKVMTEADLGLADSYINDFSLL--LNVFQIVIANQDFDSSTSKLKKKRGWWSPMFFTASIASAKYFFRNISRKNSLTQARRNVSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            G   N      +R+ NP F+ +V+ E  LGL +SY++ +     L++F   +     ++      K          T  IA A+ F  N+  K       +    HYDL N+LFS  LD  M YSCA +K + ++LE  Q  K+ ++ EK ++  G  VLDIGCGWG LA  +         G+T+S
Sbjct:   28 GIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKD---------TLRIAGARLF--NLQSKKRAWIVGKE---HYDLGNDLFSRMLDPFMQYSCAYWK-DADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTIS 199          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: CFA1_MYCTU (Cyclopropane-fatty-acyl-phospholipid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3
Query:  456 NVSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            NV  HYDL+++ F LFLD + TYSCA F+ +   L+  Q+ K+ + + K  +  G  +LD+GCGWG   +  V++      G+TLS
Sbjct:   11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLS 96          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: CFA1_MYCTA (Cyclopropane-fatty-acyl-phospholipid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3
Query:  456 NVSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            NV  HYDL+++ F LFLD + TYSCA F+ +   L+  Q+ K+ + + K  +  G  +LD+GCGWG   +  V++      G+TLS
Sbjct:   11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLS 96          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: YLP3_PSEPU (Uncharacterized methyltransferase in lpd-3 5'region OS=Pseudomonas putida PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 3
Query:  459 VSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            +S HYD++N  + L+LD+ M YSCA F+     L+  Q  K   L  K R++ G  +LD+GCGWG LA    ++   K  GITLS
Sbjct:  107 ISYHYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDVGCGWGGLARFAAREYDAKVFGITLS 191          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: CFA2_MYCLE (Cyclopropane-fatty-acyl-phospholipid synthase OS=Mycobacterium leprae GN=cmaA2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  459 VSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            V  HYD +NE F L+LD SMTYSCA F+     LE  Q  K  + + K  +  G  +LDIGCGWG+  +  +++      G+TLS
Sbjct:   23 VQSHYDRSNEFFKLWLDPSMTYSCAYFERPDLTLEEAQRAKRDLALSKLGLEPGMTLLDIGCGWGSTMLHAIEKYDVNVIGLTLS 107          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: CFA2_MYCTU (Cyclopropane-fatty-acyl-phospholipid synthase 2 OS=Mycobacterium tuberculosis GN=cmaA2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  459 VSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            V  HYD +NE F L+LD SMTYSCA F+     LE  Q  K  + ++K  +  G  +LDIGCGWG+     V +      G+TLS
Sbjct:   20 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLS 104          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: CFA2_MYCBO (Cyclopropane-fatty-acyl-phospholipid synthase 2 OS=Mycobacterium bovis GN=cmaA2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  459 VSRHYDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            V  HYD +NE F L+LD SMTYSCA F+     LE  Q  K  + ++K  +  G  +LDIGCGWG+     V +      G+TLS
Sbjct:   20 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLS 104          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: MMA1_MYCTU (Methoxy mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=mma1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  471 YDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            YD++++ F+LFLD +  Y+CA F+ +   LE  Q+ KV + ++K  +  G  +LD+GCGWG   +  V++      G+TLS
Sbjct:   15 YDISDDFFALFLDPTWVYTCAYFERDDMTLEEAQLAKVDLALDKLNLEPGMTLLDVGCGWGGALVRAVEKYDVNVIGLTLS 95          
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: MMA1_MYCTA (Methoxy mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mma1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  471 YDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            YD++++ F+LFLD +  Y+CA F+ +   LE  Q+ KV + ++K  +  G  +LD+GCGWG   +  V++      G+TLS
Sbjct:   15 YDISDDFFALFLDPTWVYTCAYFERDDMTLEEAQLAKVDLALDKLNLEPGMTLLDVGCGWGGALVRAVEKYDVNVIGLTLS 95          
The following BLAST results are available for this feature:
BLAST of CB290675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CFA_ECOLI4.720e-1732.09Cyclopropane-fatty-acyl-phospholipid synthase OS=E... [more]
CFA_ECOL64.720e-1732.09Cyclopropane-fatty-acyl-phospholipid synthase OS=E... [more]
CFA1_MYCTU4.884e-1439.53Cyclopropane-fatty-acyl-phospholipid synthase 1 OS... [more]
CFA1_MYCTA4.884e-1439.53Cyclopropane-fatty-acyl-phospholipid synthase 1 OS... [more]
YLP3_PSEPU1.421e-1342.35Uncharacterized methyltransferase in lpd-3 5'regio... [more]
CFA2_MYCLE2.424e-1342.35Cyclopropane-fatty-acyl-phospholipid synthase OS=M... [more]
CFA2_MYCTU3.166e-1343.53Cyclopropane-fatty-acyl-phospholipid synthase 2 OS... [more]
CFA2_MYCBO3.166e-1343.53Cyclopropane-fatty-acyl-phospholipid synthase 2 OS... [more]
MMA1_MYCTU3.500e-1237.04Methoxy mycolic acid synthase 1 OS=Mycobacterium t... [more]
MMA1_MYCTA3.500e-1237.04Methoxy mycolic acid synthase 1 OS=Mycobacterium t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290675 ID=CB290675; Name=CB290675; organism=Citrus sinensis; type=EST; length=713bp
CGCACTAGGATTGTGCTGTTTTGAGCAACCCAAAGCACATGGCACCGTCT
CTGCTGGAAAAAGGGGCGCGACTTTTTGTTGCTAGATTTTTGAGACGATA
TATCTCTACTGGCCGTTTAATTTTGCTGGAGGAAGGAGGCACCATTTTCG
CTTTCGAGGGAACCCTCAGAAACAGTCCTCTGAAAACTGTTTTGAGAATT
CATAATCCCCAATTTTACTGGAAGGTTATGACAGAGGCTGATTTAGGCCT
CGCAGATTCCTATATCAACGATTTTTCTTTGCTGTTAAATGTATTTCAGA
TTGTGATTGCGAACCAAGATTTCGATTCTTCCACATCGAAATTGAAAAAG
AAGAGGGGTTGGTGGTCACCAATGTTCTTCACAGCTAGTATTGCATCTGC
AAAATATTTCTTTCGGAATATTTCAAGGAAGAATTCTCTCACACAAGCTC
GCAGGAATGTCTCTCGTCATTATGATCTGAACAATGAACTTTTTTCTCTG
TTCTTGGACAAGTCAATGACATACTCATGTGCGATATTTAAGAGCGAACA
TGAAGACTTGGAAGTTGGACAAATGAGAAAAGTTTCTGTTCTGATTGAGA
AAGCAAGAGTTAGTAAGGGGCAAGAAGTTCTTGATATTGGATGTGGGTGG
GGAACCTTAGCCATTGAAATAGTCAAGCAAACTGGATGCAAGTATACAGG
CATAACTTTGTCT
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