CB290676

Overview
NameCB290676
Unique NameCB290676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:18..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.249e-71
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = -1
Query:  213 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 629
            ESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQK YR
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.023e-69
Identity = 128/144 (88.89%), Postives = 138/144 (95.83%), Query Frame = -1
Query:  213 AAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 644
            A P TESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KAFEPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQK YR
Sbjct:    2 ATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.278e-69
Identity = 129/147 (87.76%), Postives = 138/147 (93.88%), Query Frame = -1
Query:  213 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 653
            MAT  P TESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEPILLLG+HRF GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QK YR
Sbjct:    1 MATQ-PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.975e-69
Identity = 128/147 (87.07%), Postives = 138/147 (93.88%), Query Frame = -1
Query:  213 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 653
            MAT  P TESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEP+LLLG+HRF GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QK YR
Sbjct:    1 MATQ-PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.294e-64
Identity = 122/147 (82.99%), Postives = 132/147 (89.80%), Query Frame = -1
Query:  213 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 653
            MAT  P  ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK FEP+LLLG+HRF GVDMRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQK YR
Sbjct:    1 MATQ-PAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.689e-64
Identity = 121/139 (87.05%), Postives = 133/139 (95.68%), Query Frame = -1
Query:  213 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 629
            ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KAFEP+LLLGR +F GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQK YR
Sbjct:    5 ESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.098e-63
Identity = 117/146 (80.14%), Postives = 127/146 (86.99%), Query Frame = -1
Query:  213 ATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 650
            A   P   +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQK YR
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.098e-63
Identity = 117/146 (80.14%), Postives = 127/146 (86.99%), Query Frame = -1
Query:  213 ATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 650
            A   P   +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQK YR
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.173e-57
Identity = 105/139 (75.54%), Postives = 123/139 (88.49%), Query Frame = -1
Query:  213 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 629
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QK YR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 223.016 bits (567), Expect = 1.173e-57
Identity = 105/139 (75.54%), Postives = 123/139 (88.49%), Query Frame = -1
Query:  213 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 629
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QK YR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
The following BLAST results are available for this feature:
BLAST of CB290676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS16_GOSHI9.249e-7195.6840S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS16_FRIAG1.023e-6988.8940S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS161_ARATH2.278e-6987.7640S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH2.975e-6987.0740S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS162_ARATH1.294e-6482.9940S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_TORRU1.689e-6487.0540S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_ORYSJ7.098e-6380.1440S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI7.098e-6380.1440S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT1.173e-5775.5440S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG1.173e-5775.5440S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290676 ID=CB290676; Name=CB290676; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTTTTCGTATAAACAGAAATCACTTCTTCATTCAAAAG
CAAATATAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAAT
AACAATAACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATC
CTTCAATAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACC
TCTGTTTCTTCAACGGTAAAATTTCTGGAACCTAGCCCTGGCGCCGCGTC
CTCCGAACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTC
CTATCGTACCTAACCAAAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTC
CACGTACTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTA
TAGCGTAGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATG
TCTACTCCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGC
CTTGAAACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGA
TCTTGATCAAGCCGCGGCCGCGCTTGCAGTAGGTTACTGCCACCGCCGTC
TTCTTGCGGCCGAAGCATTGCACGGACTCGGTTTTAGGAGCAGCAGTAGC
CATGTTGGGATCAGTGCTTAGTGTGTGTTTGTGTTGTGTGAG
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