CB290682

Overview
NameCB290682
Unique NameCB290682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290682 vs. ExPASy Swiss-Prot
Match: CHIP_ARATH (E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 96/161 (59.63%), Postives = 120/161 (74.53%), Query Frame = -2
Query:  249 GYIVEDIWQELARAKYLLWEQEFSKRSWELQSXXXXXXXXXXXKHVLDIFIKEGFLDEASFTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFQDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVGAYMDKHGWAYK 731
            GY+VE+IW+EL++AKY+ WE   + RSWEL S           +  LD+   E   DEA   H ++++AL +VF+KAAE+D P EVPDYLCC ITL+IF+DPVI+PSGVTYERA IL+HL KVGKFDPITRE +  + LVPNLAIKEAV AY++KH WAYK
Sbjct:  115 GYMVEEIWEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERLKALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFDPITREKIDPANLVPNLAIKEAVAAYLEKHVWAYK 275          
BLAST of CB290682 vs. ExPASy Swiss-Prot
Match: STUB1_MOUSE (STIP1 homology and U box-containing protein 1 OS=Mus musculus GN=Stub1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  258 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFQDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVGAYMDKHGW 545
            H K M  + ++F +  E     ++PDYLC KI+ ++ ++P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:  205 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 300          
BLAST of CB290682 vs. ExPASy Swiss-Prot
Match: STUB1_HUMAN (STIP1 homology and U box-containing protein 1 OS=Homo sapiens GN=STUB1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  258 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFQDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVGAYMDKHGW 545
            H K M  + ++F +  E     ++PDYLC KI+ ++ ++P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:  204 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 299          
BLAST of CB290682 vs. ExPASy Swiss-Prot
Match: STUB1_CHICK (STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  258 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFQDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVGAYMDKHGW 545
            H K +  + ++F +  E     ++PDYLC KI+ ++ ++P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:  215 HDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFISENGW 310          
The following BLAST results are available for this feature:
BLAST of CB290682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHIP_ARATH1.185e-5059.63E3 ubiquitin-protein ligase CHIP OS=Arabidopsis th... [more]
STUB1_MOUSE3.974e-2245.83STIP1 homology and U box-containing protein 1 OS=M... [more]
STUB1_HUMAN3.974e-2245.83STIP1 homology and U box-containing protein 1 OS=H... [more]
STUB1_CHICK8.852e-2244.79STIP1 homology and U box-containing protein 1 OS=G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290682 ID=CB290682; Name=CB290682; organism=Citrus sinensis; type=EST; length=738bp
ACCTTTCATGACTAATCATCAACTATGATTATCATTCAATAAAGTTCTGT
ACAACATACCAAATTAGGATCTAAACTTTATAACAACAATTTCTGTACAG
TTCAAAGGATCTTGAGACATTATATATAACTGAAATCATGGGGAATGTAA
ATTGAAACTGCAAAAATATCATTACCAAATGCGACCAATAACTCATACCA
CAACTCAGAAATAATTGCTCCAATCCTGCACTTAAAATTTCAACTTGCCT
TGTATGCCCAACCATGTTTGTCCATATATGCTCCAACTGCTTCCTTTATT
GCCAAGTTTGGTACAAGCTGGGATTCTCTCAGTGGTTCCCGTGTGATTGG
ATCAAACTTACCCACCTTATCAAGATGATCAAGGATCACTGCCCTCTCAT
AAGTAACCCCACTTGGAGTAATGACAGGATCTTGAAAAATATCAAGAGTT
ATTTTGCAACACAGGTAATCTGGGACCTCAGCTGGCGTGTCGTCTTCTGC
AGCTTTCCGGAATACTTGTCTCAAAGCCTCCATTTGTTTCAAATGAGTAA
AACTAGCTTCATCCAAGAACCCTTCTTTTATAAAAATATCAAGAACATGC
TTTTCTTCAAGAGCTGCTTCACAAGCTTCCTTCAAGCTTTGTAATTCCCA
TGAACGCTTGCTAAATTCTTGCTCCCACAACAGGTATTTTGCTCTTGCCA
GCTCCTGCCAAATATCCTCTACAATATAACCCCTTTGG
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