CB290683

Overview
NameCB290683
Unique NameCB290683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290683_ssr147 microsatellite CB290683_ssr147:147..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: CHIP_ARATH (E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.952e-68
Identity = 124/209 (59.33%), Postives = 156/209 (74.64%), Query Frame = 1
Query:  190 LAGVAK-QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSXXXXXXXXXXXXHVLDISIKEGFLDEASSTHLKQMEALRQVFRKAAKDDTPAEVPDYLCCKITL 813
            + GVA   AE+L+ DGN  F K+R+GAAIDAYTEAI L PNVP YWTNRALCH+KR DWTKVE DCRKAIQL H+SVK HY+LGL LLQ+ E+  G+KEL++AL+LGR + P GY+VE+IW+EL++AKY+ WE  S+ RSWEL S              LD+S  E   DEA + H ++++AL +VF+KAA++D P EVPDYLCC ITL
Sbjct:    2 VTGVASAMAERLKEDGNNCFKKERFGAAIDAYTEAIALSPNVPAYWTNRALCHMKRKDWTKVEEDCRKAIQLVHNSVKAHYMLGLALLQKKEFTNGVKELQRALDLGRCSNPTGYMVEEIWEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERLKALERVFKKAAEEDKPTEVPDYLCCNITL 210          
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: STUB1_HUMAN (STIP1 homology and U box-containing protein 1 OS=Homo sapiens GN=STUB1 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 66/213 (30.99%), Postives = 101/213 (47.42%), Query Frame = 1
Query:  211 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLW---EQESSKRSWELQSXXXXXXXXXXXXHVLDISIK-EGFLDEA---------SSTHLKQMEALRQVFRKAAKDDTPAEVPDYLCCKIT 810
            A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+A++LD  SVK H+ LG   L+   Y E I  L++A +L +  + +    +DI   L  AK   W   E+    +  EL S             + +     EG  D++          + H K M  + ++F +  +     ++PDYLC KI+
Sbjct:   26 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKIS 236          
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: STUB1_MOUSE (STIP1 homology and U box-containing protein 1 OS=Mus musculus GN=Stub1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 66/213 (30.99%), Postives = 100/213 (46.95%), Query Frame = 1
Query:  211 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLW---EQESSKRSWELQSXXXXXXXXXXXXHVLDISIK-EGFLDEA---------SSTHLKQMEALRQVFRKAAKDDTPAEVPDYLCCKIT 810
            A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+A++LD  SVK H+ LG   L+   Y E I  L++A +L +  + +    +DI   L  AK   W   E+    +  EL S             + +     EG  D+           + H K M  + ++F +  +     ++PDYLC KI+
Sbjct:   27 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKIS 237          
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: STUB1_CHICK (STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 65/214 (30.37%), Postives = 101/214 (47.20%), Query Frame = 1
Query:  211 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDI--SIKEGFLDEA---------SSTHLKQMEALRQVFRKAAKDDTPAEVPDYLCCKIT 810
            A++ +  GN  F   +Y  A  AY  AI   P V +Y+TNRALC+LK     K  ADC++A++LD  SVK H+ LG   ++   Y E I  L++A NL +  + +    +DI   L  AK   W     KR     EL S             + +   + +E  +DE+          + H K +  + ++F +  +     ++PDYLC KI+
Sbjct:   36 AQEHKEQGNRLFGGRKYPEAAAAYGRAINRNPLVAVYYTNRALCYLKMQQHDKALADCKRALELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAK--EQRLNFGDDIPSALRIAKKKRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEENVDESRGRVQLAGIEAKHDKYLADMDELFSQVDEKRKKRDIPDYLCGKIS 247          
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  208 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNL 504
            +A+QL+ +GN +  ++ Y AA+D YT+AI L PN  +Y+ NRA    K + +T    DC KAI +D    K +  +GL L   N++ E +   +KAL+L
Sbjct:   84 KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDL 182          
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  208 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNL 504
            +A+QL+ +GN +  ++ Y AA+D YT+AI L PN  +Y+ NRA    K + +T    DC KAI +D    K +  +GL L   N++ E +   +KAL+L
Sbjct:   84 KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDL 182          
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.168e-14
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  208 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNL 504
            +A+QL+ +GN +  ++ Y AA+D YT+AI L PN  +Y+ NRA    K   +T    DC KAI +D    K +  +GL L   N++ E +   +KAL+L
Sbjct:   84 KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDL 182          
BLAST of CB290683 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.742e-11
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1
Query:  208 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGLTLLQRNEYAEGIKELEKALNL 504
            +AE+ +   N  F   +Y +AID YT+AI L  N  +YW NRA  H K  ++     D  KAI++D    KG+Y  G   L   ++ + +K+ ++   L
Sbjct:   12 RAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRL 110          
The following BLAST results are available for this feature:
BLAST of CB290683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CHIP_ARATH1.952e-6859.33E3 ubiquitin-protein ligase CHIP OS=Arabidopsis th... [more]
STUB1_HUMAN3.161e-1830.99STIP1 homology and U box-containing protein 1 OS=H... [more]
STUB1_MOUSE4.128e-1830.99STIP1 homology and U box-containing protein 1 OS=M... [more]
STUB1_CHICK4.128e-1830.37STIP1 homology and U box-containing protein 1 OS=G... [more]
SGTB_RAT3.616e-1438.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE3.616e-1438.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_HUMAN6.168e-1438.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPP5_ARATH3.742e-1133.33Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ch11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290683 ID=CB290683; Name=CB290683; organism=Citrus sinensis; type=EST; length=815bp
GCCCTAGGCTGGAACGCTCTTGAACCTCCATCGCCAAAACTCAAACACGC
TTAAAACTCGTCGTTTCGTTTCGTAATTTTCACATTTATAAAAAACCGTA
AAGAAAGTTCCAGAACCGGAGAGGATATCAGATTGGAGACCGACACAGAG
AGAGAGAGAGAGAGAGAGAGAATGGTGCTAGAAGCGGGATTGGCGGGGGT
GGCGAAGCAAGCGGAGCAACTGAGATTAGACGGAAACTATTACTTCTCTA
AAGACCGTTACGGAGCTGCCATCGACGCATATACAGAGGCGATTACACTT
TGCCCTAATGTGCCTATTTATTGGACGAATCGCGCTCTTTGTCATCTCAA
GAGGAATGATTGGACAAAAGTTGAAGCTGATTGTAGGAAAGCAATTCAGT
TGGATCACGATTCTGTCAAGGGACACTATTTGTTGGGACTAACGTTGCTA
CAGAGGAACGAGTATGCTGAGGGAATCAAGGAACTGGAAAAAGCTTTGAA
TCTTGGGAGGGGTGCAAAGCCAAAGGGTTATATTGTAGAGGATATTTGGC
AGGAGCTGGCAAGAGCAAAATACCTGTTGTGGGAGCAAGAATCTAGCAAG
CGTTCATGGGAATTACAAAGCTTGAAGGAAGCTTGTGAAGCAGCTCTTGA
AGAAAAGCATGTTCTTGATATTTCTATAAAAGAAGGGTTCTTGGATGAAG
CTAGTTCTACTCATTTGAAACAAATGGAGGCTTTGAGACAAGTATTCCGG
AAAGCTGCAAAAGACGACACGCCAGCTGAGGTCCCAGATTACCTGTGTTG
CAAAATAACTCTTGA
back to top