CB290715

Overview
NameCB290715
Unique NameCB290715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290715_ssr93 microsatellite CB290715_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290715 vs. ExPASy Swiss-Prot
Match: TGD1_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 83/123 (67.48%), Postives = 91/123 (73.98%), Query Frame = -2 
Query:  181 PRVIVSCIVFPFLIWMCFPWGRVSSPIFFEGVYGISINIILDSAQRALRSGDIISARIKFQVLGPIIFIGSCAGGVPPMGGAKGVGESTTSAGVISLVGIFIADFVFFYCFFQGGGDSLKNCV 549
            PRVI SC+  PFL  MCF  G  SS +  + VYGISINII+DSA RALR  DI+SA IK QV G II + SC+ GV   GGAKGVGESTTSA V+SLVGIFIADFV    FFQG GDSLKNCV
Sbjct:  228 PRVIASCLALPFLTLMCFTVGMASSALLSDAVYGISINIIMDSAHRALRPWDIVSAMIKSQVFGAIISVISCSWGVTTTGGAKGVGESTTSAVVMSLVGIFIADFVLSSFFFQGAGDSLKNCV 350
[Close]
BLAST of CB290715 vs. ExPASy Swiss-Prot
Match: Y1045_SYNY3 (UPF0393 membrane protein Slr1045 OS=Synechocystis sp. (strain PCC 6803) GN=slr1045 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.672e-15
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = -2 
Query:  196 PRVIVSCIVFPFLIWMCFPWGRVSSPIFFEGVYGISINIILDSAQRALRSGDIISARIKFQVLGPIIFIGSCAGGVPPMGGAKGVGESTTSAGVISLVGIFIADFVFFYCFFQGGGDS 549
            PRVI   ++ P L  +    G     +    +Y I+  I L+S Q   +  D+ +   K  V G II I  C+ G+   GGAKGVGESTT+A V SL+ IFI++F   +  FQG GD+
Sbjct:  143 PRVIACGLMLPILTGLSLFVGMAGGLVISSSLYAINPTIFLNSVQNFTQLWDVFACLFKSLVFGVIIAIIGCSWGLTTTGGAKGVGESTTTAVVTSLLAIFISNFFLSWLMFQGTGDT 260
[Close]
BLAST of CB290715 vs. ExPASy Swiss-Prot
Match: YCF63_PORPU (UPF0393 membrane protein ycf63 OS=Porphyra purpurea GN=ycf63 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.632e-13
Identity = 50/120 (41.67%), Postives = 61/120 (50.83%), Query Frame = -2 
Query:  193 PRVIVSCIVFPFLIWMCFPWGRVSSPIFFEGV-YGISINIILDSAQRALRSGDIISARIKFQVLGPIIFIGSCAGGVPPMGGAKGVGESTTSAGVISLVGIFIADFVFFYCFFQGGGDSL 549
            P+V   CI+ P L  +      ++  IF   V YGI  +I L SA  AL   D  S   K    G II   SC  G+   GGAKGVG STTS+ V  L+ IFI DF+  Y  FQ  G S+
Sbjct:  139 PKVAACCIMLPILSTISLT-ASIAISIFVSFVMYGIPSSIFLKSAFLALSVSDFFSCLQKSLCFGTIIAFISCQWGLTSSGGAKGVGNSTTSSVVTILLTIFITDFILSYFMFQSTGSSI 257
The following BLAST results are available for this feature:
BLAST of CB290715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TGD1_ARATH4.032e-3867.48Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplast... [more]
Y1045_SYNY33.672e-1538.98UPF0393 membrane protein Slr1045 OS=Synechocystis ... [more]
YCF63_PORPU2.632e-1341.67UPF0393 membrane protein ycf63 OS=Porphyra purpure... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01db06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290715 ID=CB290715; Name=CB290715; organism=Citrus sinensis; type=EST; length=562bp
TTTTTTTTTTTTTTTTTGGCCCCAGGGGTCAAAATTTGATAAATTTGAAA
GGGGATTACTTACCTTTCTGACTCCTGGGTAATACTATTGCAATATATAT
ATATTTAGGAAACCACCCCCATCCAAAATACCTGATGAAACATCAGGGTG
TGTCCCTAAACAGGGGGATATAACCAATTAAACACAGTTCTTCAGGGAAT
CTCCCCCTCCCTGGAAAAAACAATAAAAAAAAACAAAATCCGCAATAAAT
ATACCCACAAGGGAAATAACCCCCGCTGAAGTTGTTGACTCCCCCACACC
TTTTGCCCCTCCCATTGGGGGAACCCCCCCTGCACAACTCCCTATAAAAA
TGATGGGCCCCAAAACCTGAAATTTTATCCTTGCACTGATTATATCCCCT
GATCTAAGGGCTCTCTGAGCTGAATCCAATATTATGTTGATGCTAATGCC
ATAAACACCCTCAAAAAATATGGGGCTGGAAACCCTCCCCCAAGGGAAAC
ACATCCAAATCAAAAATGGGAAAACGATACAGGAAACAATTACTCTTGGG
GGCCCCCAGTAA
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