CB290716

Overview
NameCB290716
Unique NameCB290716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10164 contig Csv1_Contig10164:52..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290716 vs. ExPASy Swiss-Prot
Match: TGD1_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.869e-64
Identity = 119/156 (76.28%), Postives = 137/156 (87.82%), Query Frame = 1
Query:  370 PARHTRLFAIPNTDDGHPSVSMMEENKIT-NHAPGSEAESFLSKWSPPQYLWRGLSVPVLAGQVIIRIIKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGT 834
            P R  RL+   N +DGHPS+SM+EE   T N+AP  EAE   SKWSP +Y+WRGLSVP++AGQV++RI+KGKIHWRNTLQQLER GP+S+GVCLLTS FVGMAFTIQFVREFTRLGLNRS+GGVLALAFSRELSPV+T+IVVAGR+GSAFAAELGT
Sbjct:   49 PIRQRRLYVNLNANDGHPSMSMLEEETSTENNAPSQEAELPFSKWSPSKYIWRGLSVPIIAGQVVLRILKGKIHWRNTLQQLERTGPKSLGVCLLTSTFVGMAFTIQFVREFTRLGLNRSIGGVLALAFSRELSPVITSIVVAGRMGSAFAAELGT 204          
BLAST of CB290716 vs. ExPASy Swiss-Prot
Match: Y1045_SYNY3 (UPF0393 membrane protein Slr1045 OS=Synechocystis sp. (strain PCC 6803) GN=slr1045 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.479e-26
Identity = 55/97 (56.70%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  544 LAGQVIIRIIKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGT 834
            L GQV + I++G+I+ RNTL+Q+  VGP S+ + L+T+ FVGM FTIQ  REF   G   ++GGVL+L+ +REL+PV+TA+V+AGR+GSAFAAE+GT
Sbjct:   23 LTGQVFLHILQGRINRRNTLEQMNMVGPESMAIALITAGFVGMVFTIQVAREFIYYGATTTIGGVLSLSLTRELAPVLTAVVIAGRVGSAFAAEIGT 119          
BLAST of CB290716 vs. ExPASy Swiss-Prot
Match: YCF63_PORYE (UPF0393 membrane protein ycf63 OS=Porphyra yezoensis GN=ycf63 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.313e-18
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  490 LSKWSPPQYLWRGLSVPVLAGQVIIRIIKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGT 834
            L KW     + R  S   L  +++IR+   K++  N ++Q+  VGP S+ + LLT+ F+ M FT+Q  +EF  L    ++G V+ +AF+RELSPV+TA+++AG+IGS+F AE+ T
Sbjct:    6 LQKW-----IQRFSSTIRLFFRLLIRLKTIKVNTNNLVEQIYIVGPGSLNITLLTACFISMVFTMQIAKEFLYLDAASAIGAVIVIAFTRELSPVLTAVIIAGKIGSSFTAEIAT 115          
BLAST of CB290716 vs. ExPASy Swiss-Prot
Match: YCF63_PORPU (UPF0393 membrane protein ycf63 OS=Porphyra purpurea GN=ycf63 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.228e-17
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  490 LSKWSPPQYLWRGLSVPVLAGQVIIRIIKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGT 834
            L KW         L V +LA     R+   KI+  +  +Q+  VGP S+ + LLT+ F+ M FT+Q  +EF  L    ++G V+ +AF+RELSPV+TA+++AG+IGS+F AE+ T
Sbjct:    6 LKKWIQKLNSTLSLFVSLLA-----RLRTMKINTSSLAEQIYLVGPGSLNITLLTACFISMVFTMQIAKEFLHLDAASALGAVIVIAFTRELSPVLTAVIIAGKIGSSFTAEIAT 115          
The following BLAST results are available for this feature:
BLAST of CB290716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TGD1_ARATH8.869e-6476.28Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplast... [more]
Y1045_SYNY31.479e-2656.70UPF0393 membrane protein Slr1045 OS=Synechocystis ... [more]
YCF63_PORYE4.313e-1840.87UPF0393 membrane protein ycf63 OS=Porphyra yezoens... [more]
YCF63_PORPU6.228e-1740.87UPF0393 membrane protein ycf63 OS=Porphyra purpure... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01db06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290716 ID=CB290716; Name=CB290716; organism=Citrus sinensis; type=EST; length=835bp
GCCACTTCACTTTCACTGAGTTCGCCGTCGCCGATCACCCATCTCGCCCT
GTCTTTCTCTCACTTTCTTGGAGGGTAAAGTAAATCAATGAATGAAATTT
AAGAGTTACATTTGGTCCGTAGCTGCTGTGTTGCAACCGCCATTACAATT
GGCGTGTAATTGGATGTCTGCAGTTATTCTTTCAGTTAGAGCAACGCCTT
CACCGTAACTTAAGTTGAAAATATGCAGACCATTTCACATATTCATTCTA
TCTCTCACTTCTTGAACAGAAGGAGCTGTTTAAAACCCAATGGATTTGTC
AAAACGAAAATCTCTAGTTCAAGTTCATTTAGCTTCACTGCTAGAGTTCC
TACTTGTAAATTTCTAGTTCCTGCTCGACATACCAGATTGTTTGCGATAC
CCAACACAGATGACGGCCACCCATCTGTCTCCATGATGGAAGAAAACAAA
ATTACAAACCATGCACCCGGTTCTGAAGCAGAGTCCTTTTTGAGCAAATG
GTCGCCTCCTCAGTACCTTTGGAGGGGATTATCAGTTCCTGTCTTGGCTG
GTCAAGTAATTATTAGGATTATAAAGGGAAAAATACATTGGAGGAACACT
CTCCAACAGCTGGAGAGAGTTGGACCAAGATCTGTTGGGGTTTGTCTTTT
GACATCAGCATTTGTCGGCATGGCGTTTACTATTCAATTTGTTAGGGAAT
TCACCAGGTTGGGTTTGAATAGATCTGTTGGAGGGGTCTTAGCCCTTGCC
TTTTCAAGGGAGCTGAGTCCTGTTGTTACAGCAATTGTGGTTGCTGGCCG
AATTGGAAGTGCATTTGCAGCAGAGTTGGGAACAA
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