CB290717

Overview
NameCB290717
Unique NameCB290717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:438..1172. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CB290717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H33_VITVI4.885e-5899.13Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC4.885e-5899.13Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS4.885e-5899.13Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ4.885e-5899.13Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI4.885e-5899.13Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO4.885e-5899.13Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA4.885e-5899.13Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE4.885e-5899.13Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU4.885e-5899.13Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI4.885e-5899.13Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01db07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290717 ID=CB290717; Name=CB290717; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTTTTTTTTTTGGGGAAGAAACATCAATATTTCTTTTTATTATT
CAACAAAAACATTGAATCCATTTCATAAAACAAAAATAAATAACAAACTA
AACTTAGATTAGAAGCAAAATAATAGAGATGTTCAACACCACCACTATTG
TGGCAACAGGGATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGGGAA
TTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAAC
AAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTAC
CCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACTT
CCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTAA
GCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAAT
AGTGACACGCTTTGCATGAATGGCGCAAAGGTTAGTGTCCTCGAAGAGAC
CAACAAGGGAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCTC
TGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTCT
CTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTGC
GAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTTA
ACACCACCGGTGGTGGGCGCAGACTTACGGGCGGCCTTGGTAGCAAGTTG
CTTCCTAGGAGCCTTTCCTCCGGTT
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