CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.180e-74
Identity = 127/156 (81.41%), Postives = 139/156 (89.10%), Query Frame = -1
Query:  400 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEM 867
            QKQLKDLCK+PVDGFSAGLVDE N+FEWSV+IIGPPDTLYEGGFFNAIMTFP NYP SPPTVRFTS+MWHPNVY DG+VCISILHPPGDDP+GYELA+ERWTPVHTVE            PNDESPAN++AAKEWR+++DEFKKKVSRCVRKS EM
Sbjct:   10 QKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEM 165          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.485e-74
Identity = 126/156 (80.77%), Postives = 139/156 (89.10%), Query Frame = -1
Query:  400 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEM 867
            QKQLKDLCK+PVDGFSAGLVDE N+FEWSV+IIGPPDTLYEGGFF AIM+FP NYP SPPTVRFTS++WHPNVYPDG+VCISILHPPGDDP+GYELA+ERWTPVHTVE            PNDESPAN++AAKEWRE++DEFKKKVSRCVRKS EM
Sbjct:   10 QKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQEM 165          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.704e-73
Identity = 126/157 (80.25%), Postives = 138/157 (87.90%), Query Frame = -1
Query:  397 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 867
            QKQLKDLCK PVDGFSAGLVDE NVF+WSVSI+GPPDTLYEGGFFNAIM+FP+NYPVSPPTV FTSEMWHPNVY DGKVCISILHPPGDDP+GYELA+ERWTPVHTVE            PNDESPAN++AAKEWR+ + EF+KKVSRCVR+S EML
Sbjct:   11 QKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQEML 167          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.036e-62
Identity = 112/147 (76.19%), Postives = 124/147 (84.35%), Query Frame = -1
Query:  397 PVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 837
            P  GF  G VD+SNVFEW V+IIGPP+TLY+GG+FNAIM+FP NYP SPPTVRFTSEMWHPNVYPDG+VCISI HPPGDDPNGYELA+ERWTPVHTVE           SPNDESPANI+AAK+WRE++DEFKKKV R VRKS EML
Sbjct:   23 PSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISI-HPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQEML 168          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.396e-56
Identity = 99/157 (63.06%), Postives = 123/157 (78.34%), Query Frame = -1
Query:  397 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 867
            +KQLK++ KNP  GFS GLVD+ ++FEW V IIGP DTLYEGGFF+A ++FP +YP+ PP ++FT+E+WHPNV+P+G+VCISILHPPGDD  GYE A ERW PVH+ E           SPNDESPANIDAAKE+RE   EFKK+V R VR+S+EM+
Sbjct:   11 RKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIEMI 167          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.075e-51
Identity = 93/156 (59.62%), Postives = 117/156 (75.00%), Query Frame = -1
Query:  403 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 867
            ++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   11 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.075e-51
Identity = 93/156 (59.62%), Postives = 117/156 (75.00%), Query Frame = -1
Query:  403 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 867
            ++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   11 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.075e-51
Identity = 93/156 (59.62%), Postives = 117/156 (75.00%), Query Frame = -1
Query:  403 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 867
            ++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   11 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.968e-51
Identity = 93/155 (60.00%), Postives = 114/155 (73.55%), Query Frame = -1
Query:  403 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 867
            +KQL D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +YP  PP ++F SE+WHPN+  +G VCISILH PGDD  GYE   ERW PVHTVE            PN ESPAN+DAAK  RE   EFKKKV++CVR+S E
Sbjct:    9 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 163          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.968e-51
Identity = 92/156 (58.97%), Postives = 116/156 (74.36%), Query Frame = -1
Query:  403 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 867
            ++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE    RW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   11 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UBC7_ARATH1.180e-7481.41Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC13_ARATH4.485e-7480.77Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC14_ARATH1.704e-7380.25Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_WHEAT1.036e-6276.19Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC15_SCHPO9.396e-5663.06Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2G1_RAT1.075e-5159.62Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.075e-5159.62Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.075e-5159.62Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBC7_CAEEL6.968e-5160.00Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UB2G1_MACFA6.968e-5158.97Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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