CB290738

Overview
NameCB290738
Unique NameCB290738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.857e-42
Identity = 83/113 (73.45%), Postives = 90/113 (79.65%), Query Frame = 1
Query:   64 MAKAHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            MA   A LLLQKQL  LCK PVDGFSAG+ DE NV + SVSI GPPDTL EGGFFNAI++FP+N P SPPTV F SEMW  N Y DGKVCISI HPPGDDP+GYELA+ER TP
Sbjct:    1 MANNQASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTP 113          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.125e-41
Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   73 AHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            + A LLLQKQL  LCK+PVDGFSAG+ DE N+ E SV+I GPPDTL EGGFFNAI+TFP N P SPPTVRF S+MW  N Y DG+VCISI HPPGDDP GYELA+ER TP
Sbjct:    3 SQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTP 112          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.674e-40
Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   73 AHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            + A LLLQKQL  LCK+PVDGFSAG+ DE N+ E SV+I GPPDTL EGGFF AI++FP N P SPPTVRF S++W  N YPDG+VCISI HPPGDDP GYELA+ER TP
Sbjct:    3 SQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTP 112          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.054e-31
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  124 PVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            P  GF  G  D+SNV E  V+I GPP+TL +GG+FNAI++FP N P SPPTVRF SEMW  N YPDG+VCISI HPPGDDP GYELA+ER TP
Sbjct:   23 PSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISI-HPPGDDPNGYELASERWTP 114          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.230e-28
Identity = 58/105 (55.24%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   88 LLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            LL+KQL  + KNP  GFS G+ D+ ++ E  V I GP DTL EGGFF+A L+FP + P  PP ++F +E+W  N +P+G+VCISI HPPGDD YGYE A ER  P
Sbjct:    9 LLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLP 113          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.870e-26
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 1
Query:   85 LLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            LLL+KQL  + + PVDGFSAG+ D++++ +  V + GPPDTL EGGFF AIL FP + P  PP ++F SE+W  N   +G VCISI H PGDD +GYE   ER  P
Sbjct:    6 LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLP 111          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   64 MAKAHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            M +  + LLL++QL  L KNPV+GFSAG+ D++++    V I GPPDTL EGG F A LTFP + P  PP ++F +E+W  N   +G VCISI H PG+D YGYE   ER  P
Sbjct:    1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP 113          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   64 MAKAHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            M +  + LLL++QL  L KNPV+GFSAG+ D++++    V I GPPDTL EGG F A LTFP + P  PP ++F +E+W  N   +G VCISI H PG+D YGYE   ER  P
Sbjct:    1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP 113          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   64 MAKAHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            M +  + LLL++QL  L KNPV+GFSAG+ D++++    V I GPPDTL EGG F A LTFP + P  PP ++F +E+W  N   +G VCISI H PG+D YGYE   ER  P
Sbjct:    1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP 113          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.430e-25
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   64 MAKAHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            M +  + LLL++QL  L KNPV+GFSAG+ D++++    V I GPPDTL EGG F A LTFP + P  PP ++F +E+W  N   +G VCISI H PG+D YGYE    R  P
Sbjct:    1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLP 113          
The following BLAST results are available for this feature:
BLAST of CB290738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBC14_ARATH2.857e-4273.45Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_ARATH4.125e-4172.73Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC13_ARATH2.674e-4070.91Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC7_WHEAT5.054e-3167.74Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC15_SCHPO5.230e-2855.24Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC7_CAEEL2.870e-2653.77Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UB2G1_RAT3.748e-2651.33Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE3.748e-2651.33Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN3.748e-2651.33Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G1_MACFA2.430e-2550.44Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290738 ID=CB290738; Name=CB290738; organism=Citrus sinensis; type=EST; length=403bp
TTCGGGACAAGGATAAATTCCCTCTCGGCTTCTAGACTTCTCTGTTCTCT
CTAATACCTTTCTATGGCGAAGGCTCATGCTATTCTCCTCCTGCAGAAGC
AGCTCATATATCTTTGTAAGAACCCAGTTGATGGATTCTCTGCTGGGGTG
GAGGATGAGAGCAATGTCTGTGAAGGGAGTGTGTCCATTACTGGACCCCC
TGATACTTTAGATGAAGGGGGATTCTTCAATGCCATATTGACTTTTCCTG
ATAATGACCCTGCGAGTCCTCCGACTGTGAGGTTTAAGTCGGAGATGTGG
GGTGCTAATGCTTACCCAGACGGAAAGGTTTGCATTTCAATTCCTCATCC
CCCGGGTGATGATCCATATGGCTATGAGCTTGCAACCGAACGGCGGACTC
CCG
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