CB290741

Overview
NameCB290741
Unique NameCB290741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290741 vs. ExPASy Swiss-Prot
Match: FBK9_ARATH (F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.220e-56
Identity = 118/228 (51.75%), Postives = 149/228 (65.35%), Query Frame = 3 
Query:   36 GDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYL--TTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPXXXXXXXXXXXXXXXCDFEDDPLAVEMYSVDT--RAWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWS 704
            GD G     S + GDILE+ILS +PL+DL SAC VS+SWNRAVF SLRR+ K  PWL ++  +QR   PY   T A AYD +S  WIE+   + P     + RSSHSTLLY LSP++ SFS D  HL W HV  PRVWR DP               CDFE+D  AVE++ +++   AWE C+SMP  L +SA+STWLSVAV+S ++YVTEK SG+T SF+P T+ W+
Sbjct:   11 GDFGEE--ESSIDGDILESILSYLPLLDLDSACQVSKSWNRAVFYSLRRL-KTMPWLFVY--NQRNSPPYTMATMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPARFSFSTDAFHLTWQHVAPPRVWRIDPIVAVVGRSLIIAGGVCDFEEDRFAVELFDIESGDGAWERCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFNPVTRSWT 233
The following BLAST results are available for this feature:
BLAST of CB290741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBK9_ARATH1.220e-5651.75F-box/kelch-repeat protein At1g23390 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290741 ID=CB290741; Name=CB290741; organism=Citrus sinensis; type=EST; length=783bp
GCACGTGGATGGATAAACAAGCAGTAGCCCCAGAAGGTGATAGTGGCAGC
AATACTAATAATAGTATTGTCCATGGAGACATCTTAGAGGCCATACTGTC
GCAGGTGCCACTGATCGACCTCGCCTCTGCTTGTTACGTGTCTAGATCAT
GGAACCGCGCCGTCTTCTCTTCTCTCCGTCGCGTCAACAAAATCAAGCCT
TGGCTGCTGCTGCATACGCAGTCGCAGAGAACTATGGCCCCCTACCTCAC
AACCGCGCACGCTTACGATGCCCGCTCCCACGTGTGGATCGAAATCAAGA
ACAATCAACCCTCGTCCTTCGACTTCCTCCTCCGCTCCTCCCATTCCACG
CTTCTCTACACCCTCTCGCCTTCCAAGCTCTCCTTCTCCTTTGACCCCCT
CCATCTCGCCTGGCACCACGTGGACGCCCCTCGCGTGTGGAGGACCGACC
CCGTTGTCGCCTTGGTCGGAGACAAAGTCGTCGTGGCCGGCGGTGCCTGC
GACTTCGAAGACGACCCGCTGGCCGTGGAGATGTACAGTGTCGACACTCG
CGCGTGGGAAATCTGCCAAAGCATGCCAGCCGTTCTCAAAGACTCAGCTG
CCTCAACTTGGCTGTCGGTTGCGGTAAATTCTCGTCAACTTTACGTGACT
GAGAAGTACTCGGGCATTACGGTCTCATTCGACCCCAGTACTAAGGGCTG
GTCCGGACCGTTCCATTTACGTCAATTTGATCACGAGAAGAAGGTATTTT
ATTCCGTGATCACGTTTGCAAACGACCGTTTGA
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