CB290742

Overview
NameCB290742
Unique NameCB290742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290742_ssr54 microsatellite CB290742_ssr54:54..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig199 contig Csv1_Contig199:11..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.898e-66
Identity = 140/227 (61.67%), Postives = 163/227 (71.81%), Query Frame = 3
Query:   69 LVSREARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 710
            +VS  +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     + VERRPRR ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ EE+G     G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKTKVE+KV DV+I
Sbjct:   18 VVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.898e-66
Identity = 139/229 (60.70%), Postives = 164/229 (71.62%), Query Frame = 3
Query:   66 PLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG------GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 710
            PLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT VERRP R ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ EE G      G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT+VE+KVIDVQI
Sbjct:   10 PLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.704e-62
Identity = 119/182 (65.38%), Postives = 145/182 (79.67%), Query Frame = 3
Query:  189 GGENKDTSVDV-HVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 710
            GG+NKD SV+V HV+ G+QGT VE++PRRTA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++E+  G        ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKTKVERKVIDVQ+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.078e-61
Identity = 124/223 (55.61%), Postives = 161/223 (72.20%), Query Frame = 3
Query:   66 PLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 710
            P++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT VER+PRR+++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR E  G       S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKTK+ER VIDVQI
Sbjct:   13 PILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.587e-57
Identity = 123/212 (58.02%), Postives = 146/212 (68.87%), Query Frame = 3
Query:   93 SIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQVERRPR-RTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA----GGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 710
            S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+ VE+RP+ R  +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + E++     G S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKTKVERKVIDVQI
Sbjct:   21 SVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.614e-49
Identity = 114/230 (49.57%), Postives = 134/230 (58.26%), Query Frame = 3
Query:   69 LVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-----------ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 710
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G  V+RRPRR   DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E   G            S SSYD RL LPD C+K +V+AELKNGVL +S+PK + ERKVIDVQ+
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.133e-49
Identity = 123/234 (52.56%), Postives = 149/234 (63.68%), Query Frame = 3
Query:   72 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQVERRPRRT-ALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 710
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G  V+RRPRR+ ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE  GA           S SSYD RL LPD C+K KV+AELKNGVL +++PKT+VERKVIDVQ+
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 76/215 (35.35%), Postives = 109/215 (50.70%), Query Frame = 3
Query:   72 VSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQVERR--PRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSS----YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 692
            + R   +SIA R+    SV  PA S +  +   AVR+    GEN D            G  + RR  PRR     S   + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG    S    + +R+ LPD   K D++KAE+KNGVL + IPK K + +
Sbjct:    7 LKRLLSSSIAPRSR---SVLRPAVSSR-LFNTNAVRSYDDDGENGD------------GVDLYRRSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.379e-16
Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  300 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSS--YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 692
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE    S     + +R++LP+   K D++KAE+KNGVL + IPK K + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16
Identity = 47/139 (33.81%), Postives = 75/139 (53.96%), Query Frame = 3
Query:  300 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERKVIDVQIL 713
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL             L+IK E   E         Y +R++L  N  K D +KAE+KNGVL +++PK K E K    Q++
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVM 202          
The following BLAST results are available for this feature:
BLAST of CB290742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS22C_PETHY1.898e-6661.67Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC1.898e-6660.70Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN3.704e-6265.38Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA1.078e-6155.61Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH3.587e-5758.0225.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT1.614e-4949.57Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ6.133e-4952.5626.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH8.638e-1935.3523.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.379e-1636.5723.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU8.938e-1633.81Small heat shock protein, chloroplastic OS=Chenopo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290742 ID=CB290742; Name=CB290742; organism=Citrus sinensis; type=EST; length=835bp
GCTCAAGTGCTCAGAAAACAAAGTGAAAATAAATGGCTGCAACATTATCT
ATCTCATCATCATCACCCTTGGTATCGCGCGAGGCCAGGACCTCAATAGC
TAGGAGAAATGTGGCGCCATGCTCGGTAACCTTACCGGCAACGTCAAGGA
AAGGCGCCTATCGGCTACAAGCCGTGAGAGCTCAGGCTGGTGGGGAGAAC
AAGGATACTTCGGTTGACGTCCATGTTAATTCCGGTAACCAAGGAACCCA
AGTGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTCACCTTTCGGTT
TGATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTGGACACA
ATGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAGCCGGGC
TGGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGGAGGAAA
ATGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAGGATGTC
AAAGTGTCGGTGGAAGATGAAGTCCTTGTCATTAAAGGAGAGCACAGGGC
AGAAGAAGCTGGAGGTGCAAGTTTTAGCTCTTACGATACTCGTCTCCAGC
TTCCTGATAACTGTGAGAAAGATAAGGTCAAGGCAGAGCTCAAGAATGGT
GTTCTTTACATTTCAATTCCTAAGACAAAGGTGGAGCGCAAGGTCATTGA
TGTTCAGATTCTGTAATTATAATAATGAGTGCCTAGCGAAATGTGTATGT
TGAGGTTTTGTGATCTACATGTCCAGCTTTGTAAGTGTATAAATAAATTG
AGATGCAGAGCTGAAGAATGGTGTTCTTTACATTT
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