CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12322 contig Csv1_Contig12322:302..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ARATH (3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 2.495e-104
Identity = 175/206 (84.95%), Postives = 194/206 (94.17%), Query Frame = -2
Query:  264 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 881
            +P D TT  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDF+AAAK+F A+G+KVKVPTFLVPATQKVWMDVY LPVPG+GGKTC+QIFEEAGCDTPASPSCGACLGGP DTYAR+NEP VCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTG V DPREFL+
Sbjct:  304 IPPDATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFLVPATQKVWMDVYALPVPGAGGKTCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGRVADPREFLQ 509          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_METMA (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina mazei GN=leuC1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.810e-39
Identity = 97/203 (47.78%), Postives = 123/203 (60.59%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            VP D  TF +L+++   PYEPVYSD  AS+L E+ +D   +EP VA PH  DN     E +   +D+V+IG+CT G+ ED   AA V    GKKV V T ++PA++       TL      G    +I  +AG  T A+P CG CLG  +     + E  VCVST NRNF GRMG K+G IYLASP TAAASALTG +TDPR+
Sbjct:  203 VPPDEKTFDFLKNRAVAPYEPVYSDPDASYLKEFVYDAGDIEPQVACPHQVDNVKPVGEVEGTHVDQVFIGTCTNGRLEDLEVAASVL--KGKKVTVRTIIIPASRS------TLLAAIKNG--TMEILLKAGV-TLATPGCGPCLGAHQGV---LGEGEVCVSTANRNFKGRMG-KDGFIYLASPATAAASALTGEITDPRK 390          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_METAC (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina acetivorans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.798e-36
Identity = 92/202 (45.54%), Postives = 120/202 (59.41%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            VP D  TF++L+++ +  YEPVY+D  A +L E+ +D   +EP VA PH  DN     E +   +D+V+IG+CT G+ ED   AA V    GK+V V T ++PA++       TL      G    +   +AG  T A+P CG CLG  +     + E  VCVST NRNF GRMG K G IYLASP TAAASALTG +TDPR
Sbjct:  236 VPPDEKTFEFLKNRAAATYEPVYADPDAVYLEEFTYDADDIEPQVACPHQVDNVKPVGEVEGTHVDQVFIGTCTNGRLEDLEVAAAVL--KGKQVAVRTIVIPASRT------TLLAAIENG--TMETLLKAGV-TLATPGCGPCLGAHQGV---LGEGEVCVSTANRNFKGRMG-KGGFIYLASPATAAASALTGEITDPR 422          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_METKA (3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri GN=leuC1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.443e-35
Identity = 86/205 (41.95%), Postives = 116/205 (56.59%), Query Frame = -2
Query:  267 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 881
            VP D  T +Y++ +      PV  D  A + +E   D+S LEP VAKP SPDN     E + + ID+V+IGSCT G+ ED   AA+V         V   ++PA+++V+       V         ++  EAG      P+CG CLGG     A   E   CV+T+NRNFPGRMGH+E ++YLASP TAAASA+ G +TDPR +L
Sbjct:  226 VPPDEKTLEYVKKRAGTEGRPVEPDPDARYEAELTLDVSDLEPQVAKPFSPDNVVPVGEVEGIAIDQVFIGSCTNGRYEDLKVAAEVLEGEEVHDDVRLIVIPASREVYHRTLKDGV--------LEVLHEAGA-LICPPNCGPCLGGHMGVLA---EGERCVATSNRNFPGRMGHRESEVYLASPATAAASAIEGEITDPRPYL 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_HALOH (3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.215e-35
Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = -2
Query:  267 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 881
            +  D  TFKYLE++    Y P YSD+ A +     +D+S +EP VA PH P+N     E  D+KID+  IGSCT G+ ED   AA +         V   ++P TQ ++             +   +IF EAG    ++P+CG CLGG     AR  +    ++TTNRNF GRMGH E ++YLA+P  AAASA+ GY+  P E L
Sbjct:  228 IAPDEKTFKYLENRAQRDYTPCYSDDDAEYEKVIEYDVSDIEPQVAFPHLPENTRPISEEGDIKIDQAVIGSCTNGRMEDLRIAAGILKEKQVHHDVRCIVIPGTQDIYKQALK--------EGLIEIFIEAGA-AVSTPTCGPCLGGHMGILARGEK---AIATTNRNFVGRMGHPESEVYLANPAVAAASAIKGYIAHPEEVL 420          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOK5 (3-isopropylmalate dehydratase large subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=leuC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.764e-33
Identity = 79/202 (39.11%), Postives = 112/202 (55.45%), Query Frame = -2
Query:  273 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 878
            P D  T +Y+++ ++  Y    +DE A ++     D+SK+ P VA PH P+N     E  ++KID+V IGSCT G+  D   AAKV         V T + PATQ +++            +   +IF E+G    ++P+CG CLGG     A+       V+TTNRNF GRMGH E ++YLASP  AAASA+TG ++ P E
Sbjct:  229 PVDEKTIEYVKEHSNRSYTVYEADEDAEYVKTIEIDLSKIPPTVAFPHIPENTRTIDEVGEIKIDQVVIGSCTNGRIGDLRVAAKVLKGRKVNSNVRTIIFPATQSIYLQAMK--------EGLLEIFIESGA-VVSTPTCGPCLGGHMGILAKGER---AVATTNRNFTGRMGHVESEVYLASPAVAAASAVTGKISSPEE 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOB8 (3-isopropylmalate dehydratase large subunit OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=leuC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.930e-33
Identity = 84/202 (41.58%), Postives = 111/202 (54.95%), Query Frame = -2
Query:  279 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 878
            P D  T +YL+D  S  ++   +DE A +   +  D+S+L P V+ PH PDN        DV ID+V IGSCT G+  D   A  +    GKKVK  +   ++P TQK+++      +             EAG    ++P+CG CLGG     A+      CVSTTNRNF GRMGH E ++YLASP  AAASALTG +TDP
Sbjct:  229 PVDDKTEEYLKDHASREWKVYEADEDAEYDKVFEIDLSELRPTVSFPHLPDNTRTIDNTGDVAIDQVVIGSCTNGRISDLRMARDIL--KGKKVKKGIRCIVIPGTQKIYLQAIKEGIVTD--------LVEAGA-AFSTPTCGPCLGGHMGILAKGER---CVSTTNRNFVGRMGHVESEVYLASPAVAAASALTGKITDP 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOTH (3-isopropylmalate dehydratase large subunit OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=leuC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.143e-32
Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T +Y+++ ++  Y+   +DE A +++ Y  D+S+++P VA PH P N        ++KID+V IGSCT G+ ED   AA+V    G+KV   V   ++PATQK+W             +    IF +AG    ++P+CG CLGG     A+       V+TTNRNF GRMGH E +IYLASP  AAASA+ G +  P E
Sbjct:  231 DEKTIEYVKEHSTRQYKVYKADEDAEYVATYEIDLSQVKPTVAFPHLPSNTRTIDNVGNIKIDQVVIGSCTNGRIEDLRVAAEVL--KGRKVHKDVRCIIIPATQKIWKQAM--------NEGLFDIFIDAGA-AVSTPTCGPCLGGHMGILAKGER---AVATTNRNFVGRMGHPESEIYLASPAVAAASAVLGRIGSPDE 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_HELMI (3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.345e-32
Identity = 80/205 (39.02%), Postives = 111/205 (54.15%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D  T  Y+E++ + PY+   SD  A +    ++D+ KLEP+VA PH P+N     E   V+ID+V IGSCT G+ ED   AAK+    GKKV   V   + P TQ ++             +    IF +AG    ++P+CG CLGG     A+       ++TTNRNF GRMGH E ++YL  P  AAASA+ G +  PRE
Sbjct:  228 IAPDKKTIAYVEERATRPYKVYTSDPDAKYARVIKYDVEKLEPVVAFPHLPENTRPVSEAGHVEIDQVVIGSCTNGRIEDLRMAAKIL--QGKKVHKNVRCIIFPGTQAIYKQAIK--------EGLIDIFIDAGA-AVSTPTCGPCLGGHMGILAKGER---ALATTNRNFVGRMGHPESEVYLCGPNVAAASAIAGRIVHPRE 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOPH (3-isopropylmalate dehydratase large subunit OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=leuC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.675e-32
Identity = 81/204 (39.71%), Postives = 113/204 (55.39%), Query Frame = -2
Query:  273 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 878
            P D  T  Y+++  + PY    +DE A +      ++S+LEP VA PH P+N    +E  +V+ID+V IGSCT G+  D   AAKV    G+KV   +   + PATQ +++            +   Q F +AGC   ++P+CG CLGG     A         STTNRNF GRMGH E ++YL SP  AAASA+TG +++P E
Sbjct:  229 PVDDLTISYMKEHGAKPYTIYEADEDAEYEQIITINLSELEPTVAFPHLPENTKTVKEAGEVRIDQVVIGSCTNGRIGDLRIAAKVL--EGRKVAKGMRAIVFPATQAIYLQAIE--------EGLIQTFIKAGC-VVSTPTCGPCLGGHMGILAAGER---AASTTNRNFVGRMGHVESEVYLCSPAVAAASAVTGKISEPSE 418          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_ARATH2.495e-10484.953-isopropylmalate dehydratase OS=Arabidopsis thali... [more]
LEUC1_METMA2.810e-3947.783-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC1_METAC3.798e-3645.543-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC1_METKA1.443e-3541.953-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_HALOH3.215e-3540.003-isopropylmalate dehydratase large subunit OS=Hal... [more]
LEUC_CLOK51.764e-3339.113-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOB83.930e-3341.583-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOTH1.143e-3240.103-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_HELMI4.345e-3239.023-isopropylmalate dehydratase large subunit OS=Hel... [more]
LEUC_CLOPH5.675e-3239.713-isopropylmalate dehydratase large subunit OS=Clo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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