CB290758

Overview
NameCB290758
Unique NameCB290758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11804 contig Csv1_Contig11804:55..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_ARATH (3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.451e-96
Identity = 165/219 (75.34%), Postives = 191/219 (87.21%), Query Frame = 1
Query:  112 SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TTGSVK  MT+TEKI ARASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKVWD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH+ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD
Sbjct:    2 ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTTGSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKVWDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 219          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_METJA (Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii GN=leuC PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.795e-35
Identity = 77/153 (50.33%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+ EKI A+AS K ++SPGD V  N+D+ M HD+ GP +    K E+G   KVW+ EKIVI+ DH +     +A  N  ++R F  EQ IKYFYDI++           GVCH  L ++GH  PGEV++G DSHTCT GAFG FATGIG+TD
Sbjct:    3 MTIVEKILAKASGKKEVSPGDIVMANIDVAMVHDITGPLTVNTLK-EYGIE-KVWNPEKIVILFDHQVPADSIKAAENHILMRKFVKEQGIKYFYDIRE-----------GVCHQVLPEKGHVAPGEVVVGADSHTCTHGAFGAFATGIGSTD 142          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC1_METTH (3-isopropylmalate dehydratase large subunit 1 OS=Methanobacterium thermoautotrophicum GN=leuC1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.083e-33
Identity = 75/154 (48.70%), Postives = 101/154 (65.58%), Query Frame = 1
Query:  307 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            +MT++EKI ARAS K ++  G+ V  ++D+ MTHD+ GP S   F+   GE+ +VWD EKIV+I DH +      A +N  I+RDF  EQ I+ FYD+++           GVCH  L ++GH  PGEV++GTDSHTCT GA G FATGIG+TD
Sbjct:    2 SMTVSEKILARASGKDRVEAGEIVMADIDVAMTHDLTGPLSVESFRA-IGED-RVWDPEKIVVIFDHQVPADSIEAAQNHMIMRDFVEEQGIRNFYDVRE-----------GVCHQVLPEKGHVVPGEVVVGTDSHTCTHGALGAFATGIGSTD 142          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC1_METKA (3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri GN=leuC1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.080e-28
Identity = 66/152 (43.42%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  313 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            T+ EKI +RAS +     GD V  N+D+ M HD+ GP    + + E     +VWD  KIV++ DH +      A  N  I+R+F  EQ I++FYD+++           GVCH  L ++GH RPG+V++G DSHTCT GA G FATGIG+TD
Sbjct:    4 TMAEKILSRASGE-DAEAGDIVVANIDVAMVHDITGP--ITVQRLEEMGVERVWDPSKIVVLFDHQVPADSVEAAENHKIMREFVEEQGIEHFYDVRE-----------GVCHQVLPEKGHVRPGDVIVGADSHTCTHGALGAFATGIGSTD 141          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC2_METMA (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei GN=leuC2 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.022e-28
Identity = 70/157 (44.59%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGP----GSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT++EKIF++AS  P +  GD V  N+D+ MTHD+ GP    G + I + E  E+ KVWD  KIVII DH +      A +N  +LR F  EQ I   YD+           Y+GVCH  L ++GH +PG++++G+DSHTC  G+ G F+TGIG+TD
Sbjct:    1 MTVSEKIFSKASGTP-VKAGDFVLANIDLAMTHDITGPLAVQGFYEIMRDE--EDKKVWDPSKIVIIFDHQVPADSINAAQNHIMLRKFAKEQGILN-YDV-----------YEGVCHQVLPEKGHVKPGDLIVGSDSHTCAYGSLGAFSTGIGSTD 142          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC2_METAC (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.996e-27
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGP----GSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT++EKIF++AS  P +  GD V  N+D+ MTHD+ GP    G + I + E  E  KVWD  KIVII DH +      A  N  +LR F  EQ I   YD+           Y+GVCH  L ++GH  PG++++G+DSHTC  G+ G F+TGIG+TD
Sbjct:    1 MTVSEKIFSKASGTP-VKAGDFVLANIDLAMTHDITGPLAVQGFYEIMRDE--EEKKVWDPSKIVIIFDHQVPADSINAAENHIMLRKFAKEQGILN-YDV-----------YEGVCHQVLPEKGHVLPGDLIVGSDSHTCAYGSLGAFSTGIGSTD 142          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_SYNAS (3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 61/153 (39.87%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+TEKI  R ++  ++ PG  +   VDI + +DV  P +   F+K  G+  KV+DR+K+V+IPDH+    D  +     I+RDF  EQ I ++Y++ ++G          V H  L ++G   PG++++G DSHTCT GA G FATG+G+TD
Sbjct:    3 MTITEKILCRHTDLDEVRPGMLINAKVDIALGNDVTAPLAIDEFRKAGGK--KVFDRDKVVLIPDHFTPNKDINSAAQCKIMRDFAREQEITHYYEVGEVG----------VEHALLPEKGIVLPGDLVIGADSHTCTYGALGAFATGVGSTD 143          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_DESAA (3-isopropylmalate dehydratase large subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=leuC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 57/153 (37.25%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+ EKI A  + + + SPGD +   VDI + +D+  P +  +F++     AKV+D++++V++PDH+  T D  +   V ++RDF  EQ + ++Y+  D           GV H  L ++G   PG++++G DSHTCT G  G FATG+G+TD
Sbjct:    3 MTIAEKILAAHAGQEEASPGDLINAKVDIALGNDITAPIAIKLFRQSGA--AKVFDKDRVVLVPDHFTPTKDINSAMQVKMVRDFAREQELSHWYEGGD----------SGVEHALLPEKGIVGPGDLVIGADSHTCTYGGLGAFATGVGSTD 143          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC1_ARCFU (3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus GN=leuC1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.698e-24
Identity = 62/154 (40.26%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  307 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            A TL EKIF++AS K ++  G+ V  N+D+ M HD+  P +   F++  G +AKVWD+ K+++  DH +      A  N  +LR F  EQ I   YD+K            G+ H  +  E H  PG +++G DSHTC  GA G FATGIG+TD
Sbjct:    2 AQTLVEKIFSKASGK-EVKAGEFVMANIDLAMIHDITAPLAIKAFREILGSDAKVWDKSKVIMAFDHQVPADSVHAAENHKMLRKFAEEQGI-LNYDVKG-----------GIAH-QIMVENHVEPGMLIVGADSHTCMYGALGAFATGIGSTD 141          
BLAST of CB290758 vs. ExPASy Swiss-Prot
Match: LEUC_THEYD (3-isopropylmalate dehydratase large subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 56/153 (36.60%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  310 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 768
            MT+ EKI A  + K +++PG+ +   VDI++ +D+  P +   F+K   ++  V+DRE+I ++PDH+    D +A     +LR+F  +  IK++++I  +G          + H  L +EG   PG++++G DSHTCT GA G FATG+G+TD
Sbjct:    3 MTIAEKILAAHAGKKEVTPGEIINAKVDIVLANDITAPIAIKEFEKLGVKD--VFDRERIALVPDHFTPQKDIKAAEQCKMLREFAQKYKIKHYFEIGRVG----------IEHALLPEEGIVLPGDLVIGADSHTCTYGALGAFATGVGSTD 143          
The following BLAST results are available for this feature:
BLAST of CB290758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
LEUC_ARATH3.451e-9675.343-isopropylmalate dehydratase OS=Arabidopsis thali... [more]
LEUC_METJA5.795e-3550.33Isopropylmalate/citramalate isomerase large subuni... [more]
LEUC1_METTH7.083e-3348.703-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC1_METKA3.080e-2843.423-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC2_METMA4.022e-2844.593-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC2_METAC1.996e-2744.593-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_SYNAS6.422e-2639.873-isopropylmalate dehydratase large subunit OS=Syn... [more]
LEUC_DESAA1.211e-2437.253-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC1_ARCFU2.698e-2440.263-isopropylmalate dehydratase large subunit 1 OS=A... [more]
LEUC_THEYD2.284e-2336.603-isopropylmalate dehydratase large subunit OS=The... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290758 ID=CB290758; Name=CB290758; organism=Citrus sinensis; type=EST; length=769bp
GCACGTGGTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAATCTTA
ATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAGCAAA
TAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTTCATC
AACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCACAATT
TTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTGTCGG
TCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTCGGTA
AAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAGAGAA
ACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATCTTGA
TGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAAAGAG
TTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTATACC
TGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTGGATA
TCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGATATT
AAAGATCTTGGTAACTTTAAGGCTAACCCGGATTATAAAGGCGTATGTCA
TATTGCACTTGCCCAAGAAGGCCATTGCAGGCCTGGAGAGGTCTTGCTAG
GTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTGCCACT
GGCATTGGCAACACTGATG
back to top