CB290820

Overview
NameCB290820
Unique NameCB290820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5452 contig Csv1_Contig5452:16..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290820 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 7.591e-45
Identity = 95/151 (62.91%), Postives = 108/151 (71.52%), Query Frame = -1 
Query:  419 ANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXTMLEALQVVGDAHDGHLGENFE-GNNGYAAPYDEGST-SGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNG 865
            ANVF C YLVNLARPAHR+IP+ HQ+ALWYSGLRGAMAFALALQSVHDLPEGHGQ                      TMLEAL+VVGD+HD  LG+ FE  N+ Y   YD+  T  G+  + KL+EF KSAASFT LD+NYLTPFFTS+NG
Sbjct:  357 ANVFGCGYLVNLARPAHRKIPMTHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTKLREFHKSAASFTELDRNYLTPFFTSNNG 507
[Close]
BLAST of CB290820 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.387e-38
Identity = 84/157 (53.50%), Postives = 104/157 (66.24%), Query Frame = -1 
Query:  419 NVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXTMLEALQVVGDAHDGHLGENFEGNNGYAAP---------YDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNG 862
            NVF CAYLVNL R  +++IP+KHQ+ALWYSGLRGAMAFALALQS+HDLPEGHGQ                       MLEAL+VVGD  D  + E FE ++    P          ++ S+SG++ KMKLKEF K+  SFTALDKN+LTPFFT+++G
Sbjct:  354 NVFGCAYLVNLFRQENQKIPMKHQKALWYSGLRGAMAFALALQSLHDLPEGHGQIIFTATTTIVVVTVLLIGGSTGKMLEALEVVGDDLDDSMSEGFEESDHQYVPPPFSIGASSDEDTSSSGSRFKMKLKEFHKTTTSFTALDKNFLTPFFTTNSG 510
The following BLAST results are available for this feature:
BLAST of CB290820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NHX6_ARATH7.591e-4562.91Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
NHX5_ARATH1.387e-3853.50Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290820 ID=CB290820; Name=CB290820; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTTTCCCTTGCCACGTGTGATCGAGGGCAGGACTTAA
GAATATATTTGCTAAATCAGGTGTACAGACAAACAGACATCAGTAAGGTA
GGACAAGTAACTGCCTGATCGCTAATTGTGATTCATCAGTGCCTAATATA
AAAAAATCTCCTTTGTATGACACTTGTATAACTGTATCTTGGCATCTACG
AGAGACCGTTGAAGTTGTAATATAATATGTGCATAACTCTATTTCACCTA
TCCATCCCTTTCAGCTTGCGAGCATTACAATCATCTCTAAGCAATTATCT
ACAAATCTGACTTCATCCTGTTTCCTACTTGTTTCTGGTATAACTGTTAA
TTGGGGCCATGGAAACTCAATCTTCTGGAGCTGGGCAGTAGGTCCTCATC
CTCTTCATCTTCTTCATCCCCATTGTGACTTGTAAAGAATGGGGTAAGAT
AATTCTTATCTAATGCTGTAAACGATGCAGCACTCTTGCGGAATTCTTTC
AGTTTCATCTTCAACTTATTCCCTGATGTTGAGCCCTCATCATAAGGAGC
AGCATAGCCATTGTTACCCTCGAAATTTTCGCCTAGGTGGCCATCATGAG
CATCACCAACAACTTGTAAAGCTTCCAGCATGGTACCAGTTGAACCACCA
ATCAATAAAACTGTCAAAACAACTATGGCAGTAGTTGCAGTGAATATGGT
CTGGCCATGTCCTTCAGGGAGATCATGAACTGATTGCAACGCAAGAGCAA
AAGCCATAGCACCACGAAGTCCACTGTACCAAAGTGCTTGTTGATGTTTT
AAAGGAATCTGTCGATGTGCAGGTCGAGCCAAATTAACCAAATATGCACA
AGAAAAGACATTTGCTGGCAACTATGA
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