CB290826

Overview
NameCB290826
Unique NameCB290826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:483..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290826 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.249e-21
Identity = 62/155 (40.00%), Postives = 89/155 (57.42%), Query Frame = -2
Query:  293 NNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 754
            ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  170 SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CB290826 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.105e-19
Identity = 57/154 (37.01%), Postives = 84/154 (54.55%), Query Frame = -2
Query:  293 NWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 751
            +WL    D +  +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  173 SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CB290826 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = -2
Query:  326 NWLTEHVDFQR-------VFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 751
            NW+   V  Q        V+L GDSSGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL
Sbjct:  167 NWVKSRVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of CB290826 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 51/143 (35.66%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  293 RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 721
            RVFL GDSSGGN+ H VA RA D  +   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  191 RVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
The following BLAST results are available for this feature:
BLAST of CB290826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH2.249e-2140.00Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH2.105e-1937.01Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH1.782e-1836.91Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ4.108e-1535.66Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290826 ID=CB290826; Name=CB290826; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTTTGTTAAGTTCCATTTATTGTAATACCTTTGAGCA
CAACTAAAACAATGTAAAAATCACACGCTTGCCATGTTACTTATTTTTGT
ATATTTTAATTGGGTTGTTAAGTTACGACAAATGTAACTTAAGAAAAACC
CCACCATTAATCGGATAATCAACTATTTATGGATTAAAAAATTGATAATT
GATCAGTGCTTCCTCATAAACTCCGCTATTCCTTGAAAAAGACTACAAGT
TTGAGCAGCAGTGTTTGGGTCCATATCGACTGCAATCTTGTCGAGATAAA
AACTGTGACCCATTCCAGGATTCACCAACAACTCCACATCCTTTCCAGCC
TTTTTCATGGCTTCATAATATTCCATCTCAGTGTCCTTAATCAAGTCATT
ACCCGCCACGCACAGCAGAAACGGAGGCAGCTTCAGACCGTCGATCGGCG
ACGCAGCCGGCCCCATTGGACAGGTGTACGGATGCCCCTTGTCGCTGTTC
AACGGCAGGGCAAAGCTCAAGAACTTGTCCACCATGTCCAGAGTCAGAAG
AGGTGACTGCGGGTTTTCCAACTCCGACTTGCTCCTTTCCTGCCGGAGGA
AACCCGGATGAATCGGAATCGCTCCGGCCACACGCAACGGGCTCAAGTCC
GCGTCACCTGCACGTGCCGCCACTTCATGCACTACGTTCCCTCCGGAGCT
GTCTCCAATGAGGAAGACGCGTTGAAAATCCACATGTTCAGTCAGCCAAT
TATTCTCCCGAGCCTGAGCCTGAGCCAGTGATAGTGACCGGAGCCAA
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