CB290827

Overview
NameCB290827
Unique NameCB290827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:10..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.865e-28
Identity = 82/233 (35.19%), Postives = 124/233 (53.22%), Query Frame = 1
Query:  130 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGP 813
            +FL   VP +++ ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGP 266          
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.206e-25
Identity = 83/249 (33.33%), Postives = 119/249 (47.79%), Query Frame = 1
Query:   88 DGSVDRTWTGPPEVKFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGP 813
            DGS +R        +FL   VP +S  +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +     ++V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGP 268          
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25
Identity = 81/245 (33.06%), Postives = 115/245 (46.94%), Query Frame = 1
Query:  130 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGP 813
            ++L   VP ++  ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D     ++V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGP 275          
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.985e-25
Identity = 79/235 (33.62%), Postives = 116/235 (49.36%), Query Frame = 1
Query:  130 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGP 813
            ++L   V  +++ +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG+   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSP 268          
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 1
Query:  127 VKFLS--EPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAAR-AGDADLSPLRVAGAIPIHPGFLRQERS-KSELENPQSPLLT 729
            VKFL+  + VPP SD  ++V   + T N    + VR+Y P+          K+K     + + HGGG+CV  A    Y  +  + A  +  + VS   R APE+  P  F+D ++AL W     + +            VD +RV + GDS+GGN+   VA +   D D+  +++     I+P     +    S  EN Q P+L+
Sbjct:   61 VKFLTSFQEVPPTSD--ENVTVTETTFNN---VPVRVYVPKR---------KSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYG---------VDPERVGVSGDSAGGNLAAAVAQQLIKDPDVK-IKLKTQSLIYPALQTLDMDLPSYRENAQFPILS 241          
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: ADCL2_HUMAN (Arylacetamide deacetylase-like 2 OS=Homo sapiens GN=AADACL2 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 56/216 (25.93%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  163 DFIDSVATHDVTINKES--GLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEH-VDFQRVFLIGDSSGGNVVHEVAARA-GDADLSPLRVAGAIPIHPGF-LRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPY 795
            D+   ++   +T+   +   + VR+Y P+          K++ +   +++FHGGGFC   +    +  +    A ++ A+ V V  R AP+H  PA F+DG  A+ +     +          LT++ VD  R+ + GDSSGGN+   V  +   DA++   ++   + ++PG  +      S  EN    +LT D+  K +S  L    D+  P+
Sbjct:   69 DYTQPLSDEYITVTDTTFVDIPVRLYLPKR---------KSETRRRAVIYFHGGGFCFGSSKQRAFDFLNRWTANTLDAVVVGVDYRLAPQHHFPAQFEDGLAAVKFFLLEKI----------LTKYGVDPTRICIAGDSSGGNLATAVTQQVQNDAEIKH-KIKMQVLLYPGLQITDSYLPSHRENEHGIVLTRDVAIKLVS--LYFTKDEALPW 262          
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: AAAD_BOVIN (Arylacetamide deacetylase OS=Bos taurus GN=AADAC PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 55/203 (27.09%), Postives = 91/203 (44.83%), Query Frame = 1
Query:  151 PPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERS-KSELENPQSPLLTLDMVDKFLS 756
            PP SD  +++   D T N    + VRIY P++         K K     + + HGGG+C    D+Y Y  +    A+ + A+ +S   R AP++  P  F+D + AL W              N  +  VD  R+ + GDS+GGN+   VA +  +     +++     I+P     +    S  EN   P+L+  ++ +F S
Sbjct:   72 PPTSD--ENIIVKDTTFND---IPVRIYVPQQ---------KTKSLRRGLFYIHGGGWCFGSNDYYSYDLLSRWTAERLDAVVISTNYRLAPKYHFPVQFEDVYTALKWFLD---------PQNLESYGVDPGRIGISGDSAGGNLAAAVAQQLLEDPDVKIKLKVQTLIYPALQNFDFDLPSYRENAHYPVLSKSLMVRFWS 251          
BLAST of CB290827 vs. ExPASy Swiss-Prot
Match: AAAD_RAT (Arylacetamide deacetylase OS=Rattus norvegicus GN=Aadac PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 55/204 (26.96%), Postives = 92/204 (45.10%), Query Frame = 1
Query:  148 VPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERS-KSELENPQSPLLTLDMVDKFLS 756
            VPP SD  ++V   +   N    + VRIY P+          K+      +   HGGG+C+  A ++MY  +  + A  + A+ VS     AP++  P  F+D + +L W     + +            VD +RV + GDS+GGN+   V  +        +++     I+P     + +  S+ EN Q PLLT  ++ +F S
Sbjct:   70 VPPTSD--ENVTVMETDFNS---VPVRIYIPKR---------KSTTLRRGLFFIHGGGWCLGSAAYFMYDTLSRRTAHRLDAVVVSTDYGLAPKYHFPKQFEDVYHSLRWFLQEDILEKYG---------VDPRRVGVSGDSAGGNLTAAVTQQILQDPDVKIKLKVQALIYPALQALDMNVPSQQENSQYPLLTRSLLIRFWS 250          
The following BLAST results are available for this feature:
BLAST of CB290827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GI1L3_ARATH9.865e-2835.19Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH1.206e-2533.33Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.575e-2533.06Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH5.985e-2533.62Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
AAAD_RABIT2.208e-1129.76Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
ADCL2_HUMAN2.884e-1125.93Arylacetamide deacetylase-like 2 OS=Homo sapiens G... [more]
AAAD_BOVIN2.884e-1127.09Arylacetamide deacetylase OS=Bos taurus GN=AADAC P... [more]
AAAD_RAT8.390e-1126.96Arylacetamide deacetylase OS=Rattus norvegicus GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290827 ID=CB290827; Name=CB290827; organism=Citrus sinensis; type=EST; length=816bp
CACGAGGCAACACTCAACTAGGTAGCTATGGTGAACGATGGAAGAGCAAT
AGTGGATGAAGTGTCCGGTTGGCTAAGAGTCTACAGCGACGGTTCAGTTG
ATCGAACATGGACCGGACCACCGGAGGTCAAGTTCTTGTCCGAACCGGTG
CCACCCCACAGTGACTTTATTGACAGTGTCGCCACCCACGACGTAACCAT
CAACAAAGAATCCGGCCTCCGTGTCCGAATTTATTCACCGGAGGAGATCA
AGAAACTTAATGGTGATGATTGCAAGAACAAGAAGAAGCTACCAATCATC
CTTCACTTTCATGGGGGTGGTTTTTGCGTTAGCCAAGCTGATTGGTACAT
GTACTATCACGTTTACACGAAGCTTGCAAAATCTGTCCCGGCTATCTGTG
TCTCCGTCTATCTCCGGCGGGCCCCGGAGCACCGCCTCCCGGCCGCTTTC
GACGATGGTTTCGAAGCCCTCCTTTGGCTCCGGTCACTATCACTGGCTCA
GGCTCAGGCTCGGGAGAATAATTGGCTGACTGAACATGTGGATTTTCAAC
GCGTCTTCCTCATTGGAGACAGCTCCGGAGGGAACGTAGTGCATGAAGTG
GCGGCACGTGCAGGTGACGCGGACTTGAGCCCGTTGCGTGTGGCCGGAGC
GATTCCGATTCATCCGGGTTTCCTCCGGCAGGAAAGGAGCAAGTCGGAGT
TGGAAAACCCGCAGTCACCTCTTCTGACTCTGGACATGGTGGACAAGTTC
TTGAGCTTTGCCCTGCCGTTGAACAGCGACAAGGGGCATCCGTACACCTG
TCCAATGGGGCCGGCT
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