CB290828

Overview
NameCB290828
Unique NameCB290828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:507..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290828 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.129e-21
Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = -2
Query:  292 LAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 771
            L     ++WL    D + R+FL GDSSGGN+VH VA RA ++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP    ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  164 LKWVNSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CB290828 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 58/154 (37.66%), Postives = 85/154 (55.19%), Query Frame = -2
Query:  292 NWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 750
            +WL    D +  +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P G  ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  173 SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CB290828 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.992e-19
Identity = 59/159 (37.11%), Postives = 80/159 (50.31%), Query Frame = -2
Query:  295 NWLTEHVDFQR-------VFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFY 750
            NW+   V  Q        V+L GDSSGGN+ H VA RA    V   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP G  + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL        FY
Sbjct:  167 NWVKSRVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFY 322          
BLAST of CB290828 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  292 RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 720
            RVFL GDSSGGN+ H VA RA    V   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP G  + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  191 RVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
The following BLAST results are available for this feature:
BLAST of CB290828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH2.129e-2138.51Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH3.074e-2037.66Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH1.992e-1937.11Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.336e-1536.36Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290828 ID=CB290828; Name=CB290828; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTTTTTTTTGTAAGTTGCATTTATTGTAATAACCTGTAGCAC
AACCAAAACAATGTAAAAATCACACGCTTGCAACGTTACTTATTTTTGTA
TATTTTAGTTGGGTTGTTAAGTTACGACAAATGTAACTTAAGAAAAACCC
CACCATTAATCGGACAATCAACTATTTATGGATTAAAAATTTGATAATTG
ATCAGTGCTTCCTCATAAACTCCGCTATTCCTTGAAAAAGACCACAAGTT
TGAGCAGCAGTGTTTGGGTCCATATCGACAGCAATCTTGTCGAGATAAAA
ACTGTGACCCATTCCGGGACTCACCAACAACTCCACATCCTTTCCAGCCT
TTTTCATGGCTTCATAATATTCCATCTCAGTGTCCTTAATCAAGTCATTA
CCCGCCACGCACAGCAGAAACGGCGGCAGCTTCAGACCGTCGATCGGCGG
CCCAGCGGGCCCCATCGGACAGGTGTACGGATGCCCCTTGTCGCTGTTCA
ACGGCAGGGCAAAGCTCAAGAACTTGTCCACCATGTCCAGAGTCAGAAGA
GGTGACTGCGGGTTTTCCAACTCCGACTTGCTCCTTTCCTGCCGGAGGAA
ACCCGGATGAATCGGAATCGCTCCGGCCACACGCAACGGGCTCACGTCAG
CTTGACCTGCACGTGCCGCCACTTCATGCACTACGTTCCCTCCGGAGCTG
TCTCCAATGAGGAAGACGCGTTGAAAATCCACATGTTCAGTCAGCCAATT
ATTCTCACGAGCCTGAGCCAGT
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