CB290829

Overview
NameCB290829
Unique NameCB290829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:282..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290829 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.807e-36
Identity = 91/229 (39.74%), Postives = 128/229 (55.90%), Query Frame = 2
Query:   17 LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 700
            +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S S        WL    D + R+FL GDSSGGN+VH VA RA ++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP    ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS--------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CB290829 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.280e-34
Identity = 88/229 (38.43%), Postives = 125/229 (54.59%), Query Frame = 2
Query:   17 LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 700
            +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S        WL    D +  +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P G  ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS--------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CB290829 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 86/228 (37.72%), Postives = 119/228 (52.19%), Query Frame = 2
Query:   17 LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFY 697
            +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S          WL    D    V+L GDSSGGN+ H VA RA    V   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP G  + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL        FY
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS--------RVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFY 322          
BLAST of CB290829 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.753e-30
Identity = 84/228 (36.84%), Postives = 118/228 (51.75%), Query Frame = 2
Query:   20 PIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 700
            P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S          ++    D Q RVFL GDSSGGN+ H VA RA    V   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP G  + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS--------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
BLAST of CB290829 vs. ExPASy Swiss-Prot
Match: YKN2_SCHPO (AB hydrolase superfamily protein B1A11.02 OS=Schizosaccharomyces pombe GN=SPAPB1A11.02 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 63/237 (26.58%), Postives = 106/237 (44.73%), Query Frame = 2
Query:   23 IILHFHGGGFC---VSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAG---AIP--IHPGFLRQE---RSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 700
            +++ +H  G+C   V   D      ++  L      +CVSV  R APE + P A +D  ++  W+ S ++ +   N         +  FL G S+GGN V  ++  A    + P  + G    +P  IHP  L +E   + +S  E   +P++T  ++D F     P       P +  + P   P     LPP      G D ++D  + Y +A+K AG +  L+V  G+ H F++
Sbjct:   92 LMVFYHSSGWCMRGVRDDD-----SLFKILTPKFGCVCVSVDYRLAPESKFPVAHNDAIDSFKWVAS-NIEKLGAN-------PKRGFFLGGASAGGNFVSVLSHIARDEKIKP-ELTGLWHMVPTLIHPADLDEETMAQFRSYKETIHAPVITPKIMDIFFENYQPT------PKSPLVNPLYYPTGHKDLPPSFFQCCGWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWV 308          
BLAST of CB290829 vs. ExPASy Swiss-Prot
Match: ADCL2_HUMAN (Arylacetamide deacetylase-like 2 OS=Homo sapiens GN=AADACL2 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 48/174 (27.59%), Postives = 82/174 (47.13%), Query Frame = 2
Query:    2 KNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQARENNWLTEH-VDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGF-LRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPY 517
            K++ +   +++FHGGGFC   +    +  +    A ++ A+ V V  R AP+H  PA F+DG  A+ +     +        LT++ VD  R+ + GDSSGGN+   V  +         ++   + ++PG  +      S  EN    +LT D+  K +S  L    D+  P+
Sbjct:   99 KSETRRRAVIYFHGGGFCFGSSKQRAFDFLNRWTANTLDAVVVGVDYRLAPQHHFPAQFEDGLAAVKFFLLEKI--------LTKYGVDPTRICIAGDSSGGNLATAVTQQVQNDAEIKHKIKMQVLLYPGLQITDSYLPSHRENEHGIVLTRDVAIKLVS--LYFTKDEALPW 262          
The following BLAST results are available for this feature:
BLAST of CB290829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GI1L3_ARATH7.807e-3639.74Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH3.280e-3438.43Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH1.628e-3337.72Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ3.753e-3036.84Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
YKN2_SCHPO5.095e-1126.58AB hydrolase superfamily protein B1A11.02 OS=Schiz... [more]
ADCL2_HUMAN8.691e-1127.59Arylacetamide deacetylase-like 2 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290829 ID=CB290829; Name=CB290829; organism=Citrus sinensis; type=EST; length=715bp
GAAGAACAAGAAGAAGCTACCAATCATCCTTCACTTTCATGGGGGTGGTT
TTTGCGTTAGCCAAGCTGACTGGTACATGTACTATCACGTTTACACGAAG
CTTGCAAAATCTGTCCCGGCTATCTGTGTCTCCGTCTATCTCCGGCGGGC
CCCGGAGCACCGCCTCCCGGCCGCTTTCGACGATGGTTTCGAAGCCCTCC
TTTGGCTCCGGTCACTGTCACTGGCTCAGGCTCGTGAGAATAATTGGCTG
ACTGAACATGTGGATTTTCAACGCGTCTTCCTCATTGGAGACAGCTCCGG
AGGGAACGTAGTGCATGAAGTGGCGGCACGTGCAGGTCAAGCTGACGTGA
GCCCGTTGCGTGTGGCCGGAGCGATTCCGATTCATCCGGGTTTCCTCCGG
CAGGAAAGGAGCAAGTCGGAGTTGGAAAACCCGCAGTCACCTCTTCTGAC
TCTGGACATGGTGGACAAGTTCTTGAGCTTTGCCCTGCCGTTGAACAGCG
ACAAGGGGCATCCGTACACCTGTCCGATGGGGCCCGCTGGGCCGCCGATC
GACGGTCTGAAGCTGCCGCCGTTTCTGCTGTGCGTGGCGGGTAATGACTT
GATTAAGGACACTGAGATGGAATATTATGAAGCCATGAAAAAGGCTGGAA
AGGATGTGGAGTTGTTGGTGAGTCCCGGAATGGGTCACAGTTTTTATCTC
GACCAGATTGCTGTC
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