CB293381

Overview
NameCB293381
Unique NameCB293381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2909 contig Csv1_Contig2909:1109..1916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = -2
Query:  457 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVVKXXXXXXXLRNMHKRPQKEHQAKGHVHFKG-RATTYPRP 807
            VLLE+LSGRRAIDKN+P GEHNLV+WA+PYLT+KRR+ RV+DPRL+GQ+SL +A K A LAL C+S++ K RP M+E+VK        +   K  Q    +  ++  K  +A  YPRP
Sbjct:  269 VLLELLSGRRAIDKNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKTMEELHIQKEASKEQQNPQISIDNIINKSPQAVNYPRP 386          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.825e-26
Identity = 68/142 (47.89%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  436 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVVKXXXXXXXLR-----NMHKRPQKEHQAKGHVHFK-------------GRATTYPRPFASPLRI 807
            VLLE+LSGRRA+DKNRP+GE NLVEWAKPYL +KR+IFRV+D RL+ Q+S+ +A K A+L+L+CL+ E KLRP+M EVV        L      NM K  ++  +    V  K                  YPRP ASPL +
Sbjct:  269 VLLELLSGRRAVDKNRPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLEHIQSLNAAIGGNMDKTDRRMRRRSDSVVSKKVNAGFARQTAVGSTVVAYPRPSASPLYV 410          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.107e-23
Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = -2
Query:  442 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVVK-----XXXXXXXLRNMHKRPQKEHQAKGHVHFKGR--------------ATTYPRPFASPL 807
            VLLE+LSGRRA+DKNRP GE  LVEWA+P L +KR++FRV+D RL+ Q+S+ +A K A+LAL+CL+ E KLRP+M+EVV              RN+    ++  +    V    +              AT YPRP  SPL
Sbjct:  270 VLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLEHIQTLNEAGGRNIDMVQRRMRRRSDSVAINQKPNAGFARQTAVGVIATAYPRPSDSPL 410          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.143e-21
Identity = 47/80 (58.75%), Postives = 64/80 (80.00%), Query Frame = -2
Query:  568 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVVK 807
            +LLEILSG+RA+D NRP  E NLV+WA+PYLTSKR++  ++D RL+ Q+   +A + AS+A+QCLS EPK RP MD+VV+
Sbjct:  268 LLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTMDQVVR 347          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = -2
Query:  568 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVVK 807
            VLLE+L GR+A+D NRP  E NLV+WA+PYLTS+R++  ++D RL  Q+    A + AS+A+QCLS EPK RP MD+VV+
Sbjct:  263 VLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVR 342          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.072e-18
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = -2
Query:  571 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVV 807
            VLLE+LSGRRA+DK++   E +LV+WA PYL  KR++FR++D RL GQ+    A  AASLALQCL+ + KLRP M EV+
Sbjct:  282 VLLELLSGRRAVDKSKVGMEQSLVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVL 360          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.506e-17
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = -2
Query:  571 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVV 807
            VLLE++SGRRA+D +    E++LV+WA PYL  KR++FR++D +L GQ+    A  AA+LALQCL+ + KLRP M EV+
Sbjct:  285 VLLELISGRRAMDNSNGGNEYSLVDWATPYLGDKRKLFRIMDTKLGGQYPQKGAFTAANLALQCLNPDAKLRPKMSEVL 363          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.364e-12
Identity = 32/80 (40.00%), Postives = 54/80 (67.50%), Query Frame = -2
Query:  568 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVVK 807
            VLLEI++G  A +  RP G+ +LV+W +P L++K R+ +++D  ++GQ++   A + A + L C+  +PK RP M EVV+
Sbjct:  284 VLLEIMTGLTAHNTKRPRGQESLVDWLRPELSNKHRVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMKEVVE 363          
BLAST of CB293381 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.166e-11
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = -2
Query:  571 VLLEILSGRRAIDKNRPTGEHNLVEWAKPYLTSKRRIFRVLDPRLEGQFSLPQAQKAASLALQCLSVEPKLRPDMDEVV 807
            V LE+++GR+AID   P GE NLV WA+P    +R+  ++ DPRL+G+F      +A ++A  C+  +   RP + +VV
Sbjct:  279 VFLELITGRKAIDSEMPHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVV 357          
The following BLAST results are available for this feature:
BLAST of CB293381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NAK_ARATH1.143e-2853.39Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK1A_ARATH1.825e-2647.89Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK1B_ARATH1.107e-2344.68Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
BIK1_ARATH5.143e-2158.75Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
Y3545_ARATH4.354e-2056.25Probable receptor-like protein kinase At3g55450 OS... [more]
APK2B_ARATH1.072e-1858.23Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK2A_ARATH4.506e-1753.16Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
CX32_ARATH4.364e-1240.00Probable serine/threonine-protein kinase Cx32, chl... [more]
PBS1_ARATH2.166e-1139.24Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293381 ID=CB293381; Name=CB293381; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTTTTTTTTTTTGAGAAATAAAATACTCTGATTGTATCCATAATC
CATACATCCAATACTGCTACATATACAATCATATGGTTGCATAATCAATC
CAAAAACAAAGAAAAGGTACTCAAATGAGCTCAATTACATTTTCATGTAA
TGTTGTTGAGCTCAATTACATTTTCTCGTAATCTTGTACACATTTCCGCT
CTGATTTCAAATGTAACACATATTTGGACTACTCTTAGACTGCTTTCTTG
CACGCTCAAAACCTGAATTAGACCAGAAAACATTCACTGCATAAATAGAT
TATCCTAAACTAGAACTGTACACGGCTCAATCATAGATATGTATAACACG
TGTCACGAACTCTTCACCTTCAGGCATGAAATCTTTTTTTTTTTTTTAAA
GAAAAAAGAATCCTGCACCAAATTACTTTCCTCTAAATACGTAGTGGGGA
AGCAAAAGGCCTTGGATAAGTAGTTGCTCGACCCTTGAAATGAACGTGAC
CTTTTGCCTGGTGTTCTTTTTGGGGACGTTTGTGCATATTTCTCAACTCC
TGAAGCTGTTCTAACTCTTTTACCACTTCATCCATGTCTGGCCTTAATTT
GGGTTCGACAGATAGACATTGAAGTGCAAGGCTGGCTGCCTTTTGTGCCT
GAGGCAGTGAAAACTGGCCTTCTAGACGGGGATCAAGAACACGAAATATT
CTGCGTTTGCTGGTCAGGTAAGGTTTTGCCCACTCCACAAGATTGTGTTC
TCCAGTTGGCCGGTTTTTGTCTATAGCTCGTCTGCCAGACAATATTTCAA
GAAGAACA
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