CB293382

Overview
NameCB293382
Unique NameCB293382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2909 contig Csv1_Contig2909:30..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.965e-47
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = 1
Query:  259 MGACCSNRIKAETPSHTDVNXXXXXXXXXXXXXXXXXXXXXXLPQTPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            MG C SNRIK +  S T ++                          PR+EGEILQ++N+KNFS S+LK+ATRNFRPDSV+GEGGFG VFKGW+DE SL  ++PGTG++IAVKRLNQEGFQGH+EWL EINYLGQL HPNLVKL+GYCLE++
Sbjct:    1 MGGCFSNRIKTDIASSTWLSSKFLSRDGSKGSSTAS------FSYMPRTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEE 145          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.839e-45
Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 1
Query:  259 MGACCSNRIKAETPSHTDVNXXXXXXXXXXXXXXXXXXXXXXLPQTPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            MG C S +IKA +P  +                         +   PR+EGEILQS N+K+F++++LK ATRNFRPDSVLGEGGFGSVFKGW+DE +LT+++PGTG++IAVK+LNQ+G+QGH+EWL E+NYLGQ  HPNLVKL+GYCLED+
Sbjct:    1 MGICLSAQIKAVSPGASP-----KYMSSEANDSLGSKSSSVSIRTNPRTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDE 146          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.655e-44
Identity = 78/106 (73.58%), Postives = 99/106 (93.40%), Query Frame = 1
Query:  394 TPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            +PR+EGEILQS N+K+FS+++LK+ATRNFRPDSVLGEGGFG VFKGW+DE SLT++RPGTG++IAVK+LNQ+G+QGH+EWL E+NYLGQ  H +LVKL+GYCLED+
Sbjct:   40 SPRTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDE 145          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44
Identity = 78/104 (75.00%), Postives = 97/104 (93.27%), Query Frame = 1
Query:  400 RSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            ++EGEIL S+ +K+F++++LK ATRNFRPDSV+GEGGFG VFKGW+DE +LT T+PGTG++IAVK+LNQEGFQGH+EWLTEINYLGQL HPNLVKL+GYCLED+
Sbjct:   41 KTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDE 144          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.231e-42
Identity = 74/106 (69.81%), Postives = 95/106 (89.62%), Query Frame = 1
Query:  394 TPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            TPR+EGEIL S N+K F++++LK ATRNFRPDS+LGEGGFG VFKGW+D  +LT+++PG+G+++AVK+L  EG+QGHKEWLTE+NYLGQL HPNLVKLVGYC+E +
Sbjct:   55 TPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGE 160          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 73/104 (70.19%), Postives = 93/104 (89.42%), Query Frame = 1
Query:  400 RSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            ++EGEIL S+ +K+FS+++LK ATRNFR DSV+GEGGFG VF+GW+DE +LT T+  +G++IAVKRLN +GFQGH+EWLTEINYLGQL HPNLVKL+GYCLED+
Sbjct:   35 KTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDE 138          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 72/106 (67.92%), Postives = 92/106 (86.79%), Query Frame = 1
Query:  394 TPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            T R+EGEIL S N+K F++++LK AT+NFR D++LGEGGFG VFKGW+D+ SLT++RPG+G+++AVK+L  EGFQGHKEWLTE+NYLGQL HPNLV LVGYC E +
Sbjct:   58 TLRTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGE 163          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.511e-31
Identity = 58/100 (58.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:  409 GEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLED 708
            G++L+S N+K +++ DLKTAT+NF+PDS+LG+GGFG V++GWVD  +L  +R G+GM++A+KRLN E  QG  EW +E+N+LG L H NLVKL+GYC ED
Sbjct:   63 GKLLESPNLKVYNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCRED 162          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 48/107 (44.86%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  394 TPRSEGEIL--QSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLED 708
            +PRS  ++   +  N++ FSY +L  AT  F    V+GEGGFG V+KG +  +  +S  P   +++A+K+LN++G QGHK+WL E+ +LG ++HPN+VKL+GYC ED
Sbjct:   56 SPRSIKDLYTEREQNLRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPP---LVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSED 159          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  442 FSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            F++ +L  AT NF PD+ LGEGGFG V+KG +D          TG ++AVK+L++ G QG++E+L E+  L  LHHPNLV L+GYC + D
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDS---------TGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGD 154          
The following BLAST results are available for this feature:
BLAST of CB293382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
NAK_ARATH1.965e-4760.93Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK1B_ARATH1.839e-4556.95Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK1A_ARATH2.655e-4473.58Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
BIK1_ARATH3.468e-4475.00Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
APK2B_ARATH7.231e-4269.81Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
Y3545_ARATH1.781e-4070.19Probable receptor-like protein kinase At3g55450 OS... [more]
APK2A_ARATH1.508e-3967.92Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
CX32_ARATH1.511e-3158.00Probable serine/threonine-protein kinase Cx32, chl... [more]
Y5707_ARATH5.388e-2144.86Probable receptor-like protein kinase At5g47070 OS... [more]
PBS1_ARATH5.043e-1948.89Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293382 ID=CB293382; Name=CB293382; organism=Citrus sinensis; type=EST; length=712bp
GCCCTTTAAAGAGAACTAGNCTCGAGNNTTTTTTTTTTTTTTCTTCATAC
TCATTTGGGTGCTTCTTAATCCAGAATTGAACCCAAATCCCACCCTAAAA
GTGAAAAAGATCACACCCAAAATCTATTTGTGATCATTTGTTGAGTTGGA
GTTCTGGGTTCTGTTTGTTTCATTGAGGATAGAAAGAGAGAGTACAAAAC
AAAACCATAAAGGAAAAAAATTTCTTTAAATAAGATCTGGGTATTTTGTT
TTGTCTGGATGGGAGCTTGCTGTAGCAACAGGATTAAGGCTGAGACTCCT
TCTCATACTGATGTGAATTCAAAATATTCTAGCAGAGATGTAAAGAGTTT
AAGCAGTTCCAGTGGTAAGGCCTCTTCATTTTCCCTGCCTCAAACACCAC
GGAGTGAGGGTGAGATCTTGCAGTCATCAAATATAAAGAATTTCAGCTAC
AGCGACCTTAAGACAGCTACCAGAAACTTCCGCCCTGATAGTGTTTTGGG
AGAAGGCGGCTTTGGTTCTGTCTTCAAAGGATGGGTTGACGAGCATTCAC
TTACTTCTACAAGGCCTGGTACTGGCATGTTAATTGCTGTGAAGAGGCTT
AACCAAGAAGGTTTCCAGGGTCACAAGGAATGGCTAACAGAAATTAACTA
TCTTGGGCAGTTGCATCATCCTAATCTTGTGAAGTTGGTTGGTTACTGTT
TAGAGGATGATC
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