CB293383

Overview
NameCB293383
Unique NameCB293383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig124 contig Csv1_Contig124:1472..2365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 9.463e-91
Identity = 158/231 (68.40%), Postives = 190/231 (82.25%), Query Frame = -2
Query:  206 ADPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVDV-RMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEEEMYRWPVEIQV 895
            ADPARDG S  K+WN+NK +G+VGVFNCQGAGWCK TKK +IHD SPGTLT S+R  D + ++Q+AG  W+GD+IVYA+RSGEVVRLPKGAS+P+TLKVLEYELFH  PLKEI+ NISFA IGL+DMFNS GA+E++D+  + +K PE FDGE+SS  + +LSDNRSPTA +S  VRGCGRFG YSSQRPLKC V S +TDFTYD+  GL+T+ LPV  EEM+RW VEI V
Sbjct:  544 ADPARDGISLLKIWNMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSPGTLTGSIRADDADLISQVAGEDWSGDSIVYAYRSGEVVRLPKGASIPLTLKVLEYELFHISPLKEITENISFAPIGLVDMFNSSGAIESIDINHVTDKNPEFFDGEISS-ASPALSDNRSPTALVSVSVRGCGRFGAYSSQRPLKCAVESTETDFTYDAEVGLVTLNLPVTREEMFRWHVEILV 773          
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.613e-51
Identity = 102/230 (44.35%), Postives = 137/230 (59.57%), Query Frame = -2
Query:  209 ADPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVDVRMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSS-QRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEEEMYRWPVEIQ 895
            +DP RD  S  K+WN+N+ +GV+GVFNCQGAGWCK  K+  IHD+ PGT++  VR  DV  + ++A   W GD+IVY+H  GE+V LPK  S+PVTL   EYE+F   P+KE S    FA +GL++MFNSGGA+                        S   D+      +  K+RG G  G+YSS +RP   TV S   ++ Y+  +GL+T TL VPE+E+Y W V IQ
Sbjct:  548 SDPVRDNKSLLKIWNLNEFTGVIGVFNCQGAGWCKNEKRYLIHDQEPGTISGCVRTNDVHYLHKVAAFEWTGDSIVYSHLRGELVYLPKDTSLPVTLMPREYEVFTVVPVKEFSDGSKFAPVGLMEMFNSGGAI-----------------------VSLRYDDEGTKFVVRMKLRGSGLVGVYSSVRRPRSVTVDSDDVEYRYEPESGLVTFTLGVPEKELYLWDVVIQ 754          
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.386e-41
Identity = 87/233 (37.34%), Postives = 132/233 (56.65%), Query Frame = -2
Query:  212 ADPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAG--AGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVDVRMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTL---PVPEEEMYRWPVEI 895
            ADPARDG S  K+WN+NK +GV+GV+NCQGA W    +K   H     +LT S+R  DV ++++ +     WNGD  VY+   GE++ +P   S+PV+LK+ E+E+F   P+  +   +SFA IGL++M+NSGGA+E +     + K                         +  +V+GCG+FG YSS +P +C V S +  F YDS++GL+T  L   P+  +  +   VE+
Sbjct:  542 ADPARDGVSLLKIWNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWNGDCAVYSQSRGELIVMPYNVSLPVSLKIREHEIFTVSPISHLVDGVSFAPIGLVNMYNSGGAIEGLRYEAEKMK-------------------------VVMEVKGCGKFGSYSSVKPKRCVVESNEIAFEYDSSSGLVTFELDKMPIENKRFHLIQVEL 749          
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.903e-23
Identity = 70/224 (31.25%), Postives = 114/224 (50.89%), Query Frame = -2
Query:  239 DPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAG----WNGDAIVYAHRSGEVVRL-PKGASVPVTLKVLEYELFHFCPLKE-ISSNISFAAIGLLDMFNSGGAVENVDVRMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEE 892
            +P  D  S  K++N NK  GV+G FNCQGAGW     + + + E   T++ +V V+D+E       AG    + GD +VY  +S E++ +  K  ++ +TL+   ++L  F P+ E +SS + F  +GL++MFN  G V+++ V                       DN     +I   V+G GRF  YSS  P+KC +   + +F ++  TG ++  +P  EE
Sbjct:  668 NPLFDKESILKIFNFNKFGGVIGTFNCQGAGWSPEEHRFKGYKECYTTVSGTVHVSDIEWDQNPEAAGSQVTYTGDYLVYKQQSEEILFMNSKSEAMKITLEPSAFDLLSFVPVTELVSSGVRFVPLGLINMFNCVGTVQDMKV---------------------TGDN-----SIRVDVKGEGRFMAYSSSAPVKCYLNDKEAEFKWEEETGKLSFFVPWVEE 865          
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.951e-23
Identity = 75/218 (34.40%), Postives = 106/218 (48.62%), Query Frame = -2
Query:  251 ADPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISS---NISFAAIGLLDMFNSGGAVENVDVRMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLP 895
            ADP  DG +  K+WNVNK SGV+G FNCQG GW +  ++          +TA     DVE      G G      VY   + ++  L +  SV +TL+   YEL    P++ I S    I FA IGL +M N+GGAV+  +   A +K    DG+V++E+                 V+G G    YSS RP  C V     +F Y+   G++T+ +P
Sbjct:  579 ADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFSVPVTARASPADVE---WSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAIVSPELGIGFAPIGLANMLNAGGAVQGFE---AARK----DGDVAAEVA----------------VKGAGEMVAYSSARPRLCKVNGQDAEFKYED--GIVTVDVP 768          
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.593e-21
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = -2
Query:  284 DPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAI--VYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSN-ISFAAIGLLDMFNSGGAVENVDVRMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYD 892
            DP  +G +  K+WN+NK +GV+G+FNCQG GWC  T++ +   E    +T      D+E           G  +  VY  +  ++  +     + V+L+   +EL    PLK  S   I FA IGL++M NSGGAV++++          FD   S                +   VRGCG   +++S++P+ C +  +  +F Y+
Sbjct:  595 DPLHNGKTMLKIWNLNKYAGVLGLFNCQGGGWCPETRRNKSASEFSHAVTCYASPEDIEWCNGKTPMDIKGVDVFAVYFFKEKKLSLMKCSDRLEVSLEPFSFELMTVSPLKVFSKRLIQFAPIGLVNMLNSGGAVQSLE----------FDDSAS---------------LVKIGVRGCGELSVFASEKPVCCKIDGVSVEFDYE 775          
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.761e-20
Identity = 68/221 (30.77%), Postives = 106/221 (47.96%), Query Frame = -2
Query:  239 DPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVE--NMAQIAGAGWNGDAIVYAHRSGEVVRLP-KGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVDVRMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEE 892
            +P  D T+  K+WN NK  GV+G FNCQGAGW  I +K R   E    +  +V VT+VE     + +  G   + +VY +++ E+  +  K   +  T++   +EL+ F P+ ++   I FA IGL +MFNSGG V  +D+       ++                         KV+G G F  YSS+ P K  +   + DF +    G + + +P  EE
Sbjct:  650 NPLFDHTTVLKIWNFNKYGGVIGAFNCQGAGWDPIMQKFRGFPECYKPIPGTVHVTEVEWDQKEETSHLGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTNMFNSGGTV--IDLEYVGNGAKI-------------------------KVKGGGSFLAYSSESPKKFQLNGCEVDFEW-LGDGKLCVNVPWIEE 842          
BLAST of CB293383 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.300e-20
Identity = 61/221 (27.60%), Postives = 110/221 (49.77%), Query Frame = -2
Query:  242 DPARDGTSCSKVWNVNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVE---NMAQIAGAGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSN-ISFAAIGLLDMFNSGGAVENVDVRMAEKKPELFDGEVSSELTSSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLPVPE 892
            DP  DG +  K+WN+NK +GV+G FNCQG GWC+ T++ +   E   TLTA+    DVE     + I+ A     A+ +  +S +++       + +TL+  ++EL    P+  I  N + FA IGL++M N+ GA+ ++          +++ E                 ++   V G G F +Y+S++P+ C +     +F Y+ +  ++ +    P+
Sbjct:  582 DPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCRETRRNQCFSECVNTLTATTSPKDVEWNSGSSPISIANVEEFAL-FLSQSKKLLLSGLNDDLELTLEPFKFELITVSPVVTIEGNSVRFAPIGLVNMLNTSGAIRSL----------VYNDE-----------------SVEVGVFGAGEFRVYASKKPVSCLIDGEVVEFGYEDSMVMVQVPWSGPD 774          
The following BLAST results are available for this feature:
BLAST of CB293383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS2_ARATH9.463e-9168.40Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH5.613e-5144.35Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH1.386e-4137.34Probable galactinol--sucrose galactosyltransferase... [more]
RFS4_ARATH2.903e-2331.25Probable galactinol--sucrose galactosyltransferase... [more]
RFS_ORYSJ4.951e-2334.40Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS_PEA1.593e-2129.61Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
STSYN_PEA1.761e-2030.77Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS5_ARATH2.300e-2027.60Probable galactinol--sucrose galactosyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293383 ID=CB293383; Name=CB293383; organism=Citrus sinensis; type=EST; length=896bp
TTTTTTTTTTTTGATCGAAGATAAGACCACTTTTATTACACCATCAAAAC
AGCAACATAATTCTAGCAGTTATTCTTTTCCTGATCATCACTCAAATGCA
AGTCATGTTTCACCACAGCTTCCCACTTGAATGGAAACCCCCCCTGAACA
TGGTGACAAATCTAACAATCTGATGTTATTTAATAACATAACATGAAAGT
CCTTAGACTTGGATCTCAACAGGCCATCTGTACATCTCTTCCTCCGGAAC
CGGGAGTGTCATGGTCATCAAGCCGGTTGCAGAATCGTAGGTGAAGTCGG
TCTGGATGCTGCCCACGGTGCATTTCAGAGGACGCTGGGAAGAGTAAATG
CCAAACCTTCCACATCCCCTAACTTTGAAAGAGATTGTGGCGGTTGGAGA
TCGGTTGTCACTGAGGGAGGAGGTCAGTTCGGAAGATACTTCGCCATCAA
AGAGCTCTGGCTTCTTCTCAGCCATACGCACATCCACATTCTCGACAGCA
CCTCCACTGTTGAACATGTCGAGCAAGCCTATTGCTGCAAATGAAATGTT
TGAAGAGATCTCCTTCAGCGGGCAGAAATGGAATAGCTCATATTCAAGAA
CCTTAAGTGTTACTGGCACTGAAGCACCTTTGGGCAACCGCACAACCTCA
CCTGATCTATGGGCATAAACAATTGCATCCCCATTCCAGCCGGCACCAGC
AATCTGAGCCATATTTTCAACATCAGTTACACGAACAGATGCTGTGAGGG
TACCGGGAGATTCATCATGAATGCGGGTTTTCTTGGTAATCTTGCACCAA
CCAGCACCTTGACAGTTGAACACACCAACAACACCAGAGCATTTGTTCAC
ATTCCATACCTTNGAGCAGCTAGTCCCATCTCGGGCAGGATCAGCA
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