CB293384

Overview
NameCB293384
Unique NameCB293384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5843 contig Csv1_Contig5843:29..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 2.619e-87
Identity = 153/197 (77.66%), Postives = 171/197 (86.80%), Query Frame = 3
Query:  135 MTVTPNISISDGNLVVHGKTILTGVPDNIILTPGNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLPSFL 725
            MT+T NIS+ + NLVV GKTILT +PDNIILTP  G G V+G+FIGAT   SKSLHVFP+GVLE LRFMCCFRFKLWWMTQRMG+CGKD+PLETQFML+ESKD  E + DD PT+YTVFLPLLEGQFR+ LQGNE NEIEIC ESGD AVET+QG +LVY HAGTNPFEVI Q+VKAVE++MQTF HREKKKLPSFL
Sbjct:    1 MTITSNISVQNDNLVVQGKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESKDEVEGNGDDAPTVYTVFLPLLEGQFRAVLQGNEKNEIEICFESGDKAVETSQGTHLVYVHAGTNPFEVIRQSVKAVERHMQTFHHREKKKLPSFL 197          
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.002e-62
Identity = 113/197 (57.36%), Postives = 151/197 (76.65%), Query Frame = 3
Query:  135 MTVTPNISISDGNLVVHGKTILTGVPDNIILTPGNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLPSFL 725
            MTV   IS++D +LVV G  +L GVP+N+++TP +G  L+ GAFIG T+  + S  VF +G LEDLRFMC FRFKLWWMTQRMGT GK++P ETQF++VE+   S+    D  + Y VFLP+LEG FR+ LQGNE NE+EICLESGD  V+  +G +LV+  AG++PF+VI++AVKAVE+++QTF+HRE+KK+P  L
Sbjct:    1 MTVGAGISVTDSDLVVLGHRVLHGVPENVLVTPASGNALIDGAFIGVTSDQTGSHRVFSLGKLEDLRFMCVFRFKLWWMTQRMGTNGKEIPCETQFLIVEANQGSDLGGRDQSSSYVVFLPILEGDFRAVLQGNEANELEICLESGDPTVDQFEGSHLVFVAAGSDPFDVITKAVKAVEQHLQTFSHRERKKMPDML 197          
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.824e-57
Identity = 105/203 (51.72%), Postives = 142/203 (69.95%), Query Frame = 3
Query:  135 MTVTPNISISDGNLVVHGKTILTGVPDNIILTPGNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNS--ESDQDDG----PTIYTVFLPLLEGQFRSALQGNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLPSFL 725
            MT+ P + ISDGNL++  +TILTGVPDN+I T  +  G V G F+GA  +  +S H+ P+G L + RFM CFRFKLWWM QRMG  G+D+P ETQF+LVES D S  ESD  +G      +YTVFLPL+EG FRS LQGN N+E+E+CLESGD   + +   + +Y HAGT+PF+ I+ A++ V+ ++ +F  R +KKLP  +
Sbjct:    1 MTIKPAVRISDGNLIIKNRTILTGVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMSCFRFKLWWMAQRMGEMGRDIPYETQFLLVESNDGSHLESDGANGVECNQKVYTVFLPLIEGSFRSCLQGNVNDEVELCLESGDVDTKRSSFTHSLYIHAGTDPFQTITDAIRTVKLHLNSFRQRHEKKLPGIV 203          
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.411e-32
Identity = 73/203 (35.96%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  144 TPNISISDGNLVVHGKTILTGVPDNIILTPG------NGVGL--VAGAFIGATAS-HSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLPSFL 725
            T    + D  L+ +G+ +LT VP N+ LT        +GV L   AG+FIG       KS HV  +G L+++RFM  FRFK+WW T  +G+ G+D+  ETQ ++++   +           Y + LPLLEG FRS+ Q  E++++ +C+ESG   V  ++   +VY HAG +PF+++  A+K +  +M TF   E+K  P  +
Sbjct:   19 TEKFRLEDSTLLANGQVVLTDVPVNVTLTSSPYLVDKDGVPLDVSAGSFIGFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDIENETQIIILDQSGSDSGPGSGSGRPYVLLLPLLEGSFRSSFQSGEDDDVAVCVESGSTEVTGSEFRQIVYVHAGDDPFKLVKDAMKVIRVHMNTFKLLEEKSPPGIV 221          
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 74/198 (37.37%), Postives = 108/198 (54.55%), Query Frame = 3
Query:  147 PNISISDGNLVVHGKTILTGVPDNIILTPGNGV-------GLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQ-GNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLP 716
            P  ++   +L V G   L  VP NI LTP + +          AG+F+G  A  +K  HV P+G L D RFM  FRFK+WW T  +GT G+DV  ETQ M+++      S    GP  Y + LP++EG FR+ L+ G   + + + LESG + V  +     VY HAG +PF+++  A++ V  ++ TF   E+K  P
Sbjct:   26 PRFTLKGKDLAVDGHPFLLDVPANIRLTPASTLVPNSDVPAAAAGSFLGFDAPAAKDRHVVPIGKLRDTRFMSIFRFKVWWTTHWVGTNGRDVENETQMMILDQSGTKSS--PTGPRPYVLLLPIVEGPFRACLESGKAEDYVHMVLESGSSTVRGSVFRSAVYLHAGDDPFDLVKDAMRVVRAHLGTFRLMEEKTPP 221          
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 65/216 (30.09%), Postives = 106/216 (49.07%), Query Frame = 3
Query:  144 TPNISIS---DGNLVVHGKTILTGVPDNIILTP-------------------GNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLPSFL 725
            +P +SIS     N +V+G   LT VP NI  T                     N      G F+G   + +KS HV P+G L+ ++F   FRFK+WW T  +GT G ++  ETQ ++++   +           Y + LP+LE  FR++LQ   N+ +++ +ESG   V  +     +Y H   +P+ ++ +AVK ++  + TF   E+K  PS +
Sbjct:   24 SPLLSISLDQSRNFLVNGHPFLTQVPPNITTTTTSTPSPFLDFKSNKDTIANNNNTLQQQGCFVGFNTTEAKSHHVVPLGKLKGIKFTSIFRFKVWWTTHWVGTNGHELQHETQILILDKNISLGRP-------YVLLLPILENSFRTSLQPGLNDYVDMSVESGSTHVTGSTFKACLYLHLSNDPYRLVKEAVKVIQTKLGTFKTLEEKTPPSII 232          
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 63/217 (29.03%), Postives = 100/217 (46.08%), Query Frame = 3
Query:  129 SKMTVTPN-ISISDGNLVVHGKT-ILTGVPDNIILTPGNGVGLVA----------------GAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLPSFL 725
            +K  + PN  ++S+G+L     T IL  VP N+  TP +   +                  G F+G T           +G  ED  F+  FRFK+WW T  +G  G D+  ETQ+++++  +            Y   +P +EG FR++L   E   + IC ESG   V+ +    + Y H   NP+ ++ +A  A+  +M TF   E+KKLP  +
Sbjct:   25 TKPILQPNSFNLSEGSLCAKDSTPILFDVPQNVTFTPFSSHSISTDAPLPILLRVQANAHKGGFLGFTKESPSDRLTNSLGRFEDREFLSLFRFKMWWSTAWIGKSGSDLQAETQWVMLKIPEIDS---------YVAIIPTIEGAFRASLTPGEKGNVLICAESGSTKVKESSFKSIAYIHICDNPYNLMKEAFSALRVHMNTFKLLEEKKLPKIV 232          
BLAST of CB293384 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 46/156 (29.49%), Postives = 79/156 (50.64%), Query Frame = 3
Query:  258 GAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIEICLESGDNAVETNQGLYLVYTHAGTNPFEVISQAVKAVEKYMQTFTHREKKKLPSFL 725
            G F G +        +  +G      F+  FRFK WW TQ +G  G D+ +ETQ++L+E  +            Y V +P++E  FRSAL    N+ ++I  ESG   V+ +    + Y H   NP++++ +A  A+  ++ +F   E+K +P+ +
Sbjct:   72 GGFFGFSHETPSDRLMNSIGSFNGKDFLSIFRFKTWWSTQWIGKSGSDLQMETQWILIEVPETKS---------YVVIIPIIEKCFRSALFPGFNDHVKIIAESGSTKVKESTFNSIAYVHFSENPYDLMKEAYSAIRVHLNSFRLLEEKTIPNLV 218          
The following BLAST results are available for this feature:
BLAST of CB293384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS2_ARATH2.619e-8777.66Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH1.002e-6257.36Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH2.824e-5751.72Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH1.411e-3235.96Probable galactinol--sucrose galactosyltransferase... [more]
RFS_ORYSJ1.011e-3037.37Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS_PEA5.943e-2330.09Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS4_ARATH1.912e-2129.03Probable galactinol--sucrose galactosyltransferase... [more]
STSYN_PEA3.731e-1729.49Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293384 ID=CB293384; Name=CB293384; organism=Citrus sinensis; type=EST; length=727bp
TTTNTNNCATTTTCCTCTCACAGAACCTAAAAGTCCGTTGCGANGNGGAA
TCTCTCACTATCTCTTTAGAGCTCTCAACGAAAGAGTAATTTCGTCTCCC
GTCGTACTTATTATCCGTTCTTAGGCGCTCGAAAATGACGGTAACGCCGA
ACATCTCCATCAGTGATGGAAACTTGGTGGTTCATGGCAAGACCATACTC
ACTGGAGTGCCCGACAACATTATTCTGACTCCCGGTAATGGCGTGGGGCT
CGTTGCCGGTGCTTTCATCGGTGCCACGGCTTCTCATAGCAAAAGCCTCC
ATGTCTTTCCCATGGGTGTCTTAGAGGATCTCCGGTTTATGTGTTGCTTC
CGATTTAAGTTATGGTGGATGACCCAGAGGATGGGTACATGCGGAAAAGA
TGTACCACTGGAGACTCAATTCATGCTTGTGGAGAGCAAGGATAACTCTG
AAAGTGATCAGGATGACGGCCCAACTATCTACACTGTATTCCTTCCTCTC
CTTGAAGGCCAGTTCCGTTCCGCGCTGCAAGGCAATGAAAACAATGAGAT
AGAGATCTGCCTTGAGAGTGGAGATAATGCTGTTGAAACCAACCAAGGAC
TTTACCTTGTCTACACACACGCTGGGACTAATCCTTTTGAAGTAATCAGC
CAAGCTGTGAAGGCTGTAGAAAAATACATGCAAACTTTCACTCATCGAGA
GAAGAAGAAGTTGCCTTCTTTTCTTGA
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